Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2280 ATGTCAACGGTTACTACAAGTGCAGTTATGAAGTCCGGCGACGCCGTCTCCGACAAGTTTCCGGTGGGTCTAAGGGTCCTTGTGGTGGACGATGATCCTACGTGTCTCATGATCCTCGAGAAGATGTTGCGCACATGTCTCTACGAAGTCACCAAATGCAATAGAGCAGAGATTGCACTTTCACTTCTCAGAGAGAACAAAAATGGGTTTGACATTGTTATAAGTGATGTGCATATGCCAGACATGGATGGATTTAAGCTTTTAGAGCACATTGGGTTGGAGATGGACCTTCCTGTTATCATGATGTCTGCAGATGATGGTAAAAATGTTGTTATGGAGGGTGTGACACATGGTGCTTGCGATTACCTAATTAAACCTGTTCGCATTGAGGCTTTGAAGAACATATGGCAGCATGTGGTTCGCAAGAAGAAGAATGAGTGGAAAGATACGGAGCAATCGGGCAGTGCTGAAGAAGGAGATCGGCCGCAGAAGGCATCCGATGAAGCAGATTACTCATCCTCAGCAAATGAAGGCAGTTGGAGGAACTCAAAGAAGAGAAGGGACGAGGAAGAGGAAGCAGAGGAGAGAGATGACACATCCACGTTAAAGAAGCAGCGGGTTGTTTGGTCTGTGGAGCTCCATCAACAATTTGTGGCTGCTGTGGATCAACTGGGAATTGACAAAGCTGTTCCAAAAAAAATTCTGGAATTGATGAATGTTCCTGGACTCACTAGAGAAAATGTTGCCAGCCACCTGCAGAAATATCGATTGTATCTTCGAAGGCTGAGTGGAGTTTCTCAGCACCAGAGTAACTTGAACAACTCCTTTCTAAGCCCCCAAGAGGCGTCGTTTGGGACAATTTCTTCAATTAATGGGATTGATCTTCAAACTCTTGCAGCTGCTGGCCAGCTCCCAGCACAAAGTCTAGCCACACTTCAAGCAGCCGGACTTGGTAGGTCAACTGCAAAACCTGGTGTACCTATGCCTCTAATGGATCAAAGAAACCTTTTCAGTTTTGAAAACCCAAGGTTAAGATTTGGAGAAGGCCAACAGCAACATTTAAACAGTAGTAAACCAATGAACTTACTGCATGGAATCCCCACCAACATGGAGCCAAAGCAGCTTGCCAATTTGCACCACTCCACCCAATCCCTTGGCAGCTTGAATATGCGAGTCAATGCTCCTGCCACACAGAGCAACCCCTTATTGATGCAGATGGTGCAGTCACAACCTAGAGGTCAGATGCTGAGTGAAAATACTGGTCCTCGAGTTCCCAGACTTCCATCATCCTTGGGACAACCTACTGTGTCAAATGGAATTTCTAACGGTCTTCTGGGCAGAAACGGGGTTGCTGGTAGCAACAGAGGACCTGCTTATAATCCTGTTCCACAGGGCTCTTCATTGTTGACTTTTCCATTGAATCAAAACTCTGAAGTGTCTGTCAACAATAATTTTCCTCTTGGAAGCACTCCAGGTATATCCAGTATCACAACAAAGGGCTCATTTCAAGAGGAAGTTACATCGGGGGTTAAAGGATCTGGTGGATTTCCTAGTTATGATATTTTTAATGAACTGCACCATCAGAAGCCCCGTGATTGGGAAATAACAAACCCAGGCCTGACATACGATCCCTCCCAGCATACAAATCCTTTACAAGGTAGCATCGATGTCTCGCCTTCAGTTTTAGTCCATCAAGGATTTTCTTCTACAAAGCAAACTGGCCAAAGTAGAGATACCTCCTTGATTGGAAAAACTATGTTCTCCATGGGAGAAGGCTTGGAACACGATAATCTCCAAAATGTGGCTCAGCATCTCAATCCGTTTATTGTTGACAATTCAATTAGGGTTAAGGCTGAAAGGATTCCTGATGCAAGCTCCCAGACTAACCTCTTCCCTGAGCATTATGGACAGGAGGATCTGATGAGTGCACTTCTAAAGCAGCAAGAAGGAATTGGACCAGCTGAGAGTGAGTTTGACTTTGATGGATATTCTCTCGACAACATTCCTGTCTAG 2013 0.4521 MSTVTTSAVMKSGDAVSDKFPVGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAEIALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMEGVTHGACDYLIKPVRIEALKNIWQHVVRKKKNEWKDTEQSGSAEEGDRPQKASDEADYSSSANEGSWRNSKKRRDEEEEAEERDDTSTLKKQRVVWSVELHQQFVAAVDQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQSNLNNSFLSPQEASFGTISSINGIDLQTLAAAGQLPAQSLATLQAAGLGRSTAKPGVPMPLMDQRNLFSFENPRLRFGEGQQQHLNSSKPMNLLHGIPTNMEPKQLANLHHSTQSLGSLNMRVNAPATQSNPLLMQMVQSQPRGQMLSENTGPRVPRLPSSLGQPTVSNGISNGLLGRNGVAGSNRGPAYNPVPQGSSLLTFPLNQNSEVSVNNNFPLGSTPGISSITTKGSFQEEVTSGVKGSGGFPSYDIFNELHHQKPRDWEITNPGLTYDPSQHTNPLQGSIDVSPSVLVHQGFSSTKQTGQSRDTSLIGKTMFSMGEGLEHDNLQNVAQHLNPFIVDNSIRVKAERIPDASSQTNLFPEHYGQEDLMSALLKQQEGIGPAESEFDFDGYSLDNIPV* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2280 670 Gene3D - 24 159 - -
Apr9g2280 670 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Apr9g2280 670 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 260 IPR017930 -
Apr9g2280 670 MobiDBLite consensus disorder prediction 180 201 - -
Apr9g2280 670 Gene3D - 201 263 - -
Apr9g2280 670 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Apr9g2280 670 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 642 - -
Apr9g2280 670 SUPERFAMILY Homeodomain-like 201 261 IPR009057 -
Apr9g2280 670 MobiDBLite consensus disorder prediction 146 201 - -
Apr9g2280 670 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 642 IPR045279 GO:0009736
Apr9g2280 670 MobiDBLite consensus disorder prediction 146 167 - -
Apr9g2280 670 SMART REC_2 24 136 IPR001789 GO:0000160
Apr9g2280 670 PIRSF RR_ARR_type-B 6 662 IPR017053 GO:0003677|GO:0003700|GO:0009736
Apr9g2280 670 CDD REC_typeB_ARR-like 26 140 - -
Apr9g2280 670 SUPERFAMILY CheY-like 23 146 IPR011006 -
Apr9g2280 670 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677
Apr9g2280 670 Pfam Myb-like DNA-binding domain 206 256 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2280 Apr-Chr9 30536344 30540824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2280 58 670 Response Regulator Gene Family AT3G16857 50.153 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Apr9g2280 Response_reg 9e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2280 - K14491 gmx:100814930 1213.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2280 9 30536344 30540824 Apr9g2280 9 30536344 30540824 ECH
Apr9g2280 9 30536344 30540824 Apr1g2102 1 30552650 30556755 PCT