Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2273 ATGGCTTCAACGGACATCAGAGGCATTTTGACGGCGTTCAATCCTTCTCTAGATTTCTTCGCTATCACAACCGGTGACGGTCGCGTCAAGATATGGGACACGCTCAAAGGTCAAGTACAGACCGAGTTTGCAGATATTACGTCAACTCATCCAACTACTTCATTTGATAAATCCCTTAACGGCCATCTTTCGCTCGATTATACTTGCATCAAGTGGCTTTCCTTCGAAAGAAAGAGGAAAAGGAAACATACTTCGTCGTTGTTAGTGCTTGGAACTGGTAGTGGTGATGTTTTAGCACTTGACGTCTCTGCTGGTCAATTGAGTTGGAGAATTAATGATTGTCACCCTGGAGGTGTGAGAGCCATTGCGTCTTCGGAAAATGGATCGAGCATTTGTACGGCTGGTGCTGATGGGATGGTGTGTGTGATAGATTTCATGACAGGAAACCTGGTGGAGAAATTTAAAGCTTCTACGAAGCCAGTATCCTGTATATCTGTTTCTCCAGATGGGAAGACGTTAGCTACTGCAGCAGCACAATTGAAGATTTTCAACTGTTCCAATCACAAAAAGATTCAAAAGTTTTCTGGTCATCCTGGATCTGTTCGGTGCATGGTCTTCACCGAAGATGGCGAATATGTTCTCTCATCTGCTGTGGGTGAAAGATATGTAGCTGTTTGGAGGATAGATGGTGCTAAAAAGCAATCAGCTAGTTGTGTTCTTGCGATGGAGCACCCTGCTGTCTTTCTTGATAGCAGGTGCATTGATAGTGGGGAATGTGACAAGGCTGGATTATGTGTTTTGGCCATCTCAGAAATTGGCATTTGTTATTTATGGTTTGGAAACAATATTGAAGAACTACGTAATGCAAAGCCCACAAAAGTATCATTATCTTTAGATGACGTGTCCTCCAAAAATTACAAGGGAGCACTGCCTGCAATATATGCTGCAAAATTACAAGGCATCCAAAAGCCAACTTCTGGCCAAGTTTTTCTCGTTTATGGGTTACTTGTAAAACCATCATTTCAAAAAATTATTGTGCATTCAGGAACAGATGTAAAGTTGAATGTTTCCCGTGATGGCATTCTCCTTCCAATGAGTCAATCTCTTGTCAAATCTAAAAAGGGGATAGATGTACATAGGGTTACTGCACTTGACCGTGCAAATGCTGAGGATGCCTTGCTTCCAATTCCTAAGGTTTTTGATTCTCATGAGAAAGAGAAAGCATTTCAAGAATTTTTGGACAAGGATGTGATTGATGATTTGCATAGAAGTAGTAAAGATGATTCTCTTGAGATAGAAGATGATATGGTCCAGAGTGATACTGATGTAATTTGCATGGAGGACCGGCTGAGATCACTTGGGATGCTTCCCAGTGATAGTGATTGTGCTTCAAAAGTTGAACTTTGCTCTACATTGTTGAAGGGTATTGATCTGGAAGCTACTCTTCCAATGAAAAAGATAAGAGCAACTGTTGTGTCTATGGTGCCAAGTGAAGCATTCAAGCTACTGGAAGTGTTTCTAGGTGCATGGCAATCAAGGTCATCGAGTGGAAAGTATGTTCTTCCATGGATCTATAGCATATTAGTGAACCATGGTCACAATGTCATTGCTCAAGAATCTGTGACGCGTATACTTGATTCATTAGACAAGATTGCCAAATCTAGAGGGGCTACTCTTCAGCCTTTGTTACAATTATCAGGCCGTCTGCAACTGGTGACATCACAGATCAACAAGGCTTCTCAGACTGAAAGCCATTCAATGCATGAACTCCAAGTGGAAGAAAGTGAAGATGAGGATGAATATTATCATGAGGAAGAAGATGATGCATCTGAAATAAGTAGTGATGATGAAAGCTAG 1857 0.4146 MASTDIRGILTAFNPSLDFFAITTGDGRVKIWDTLKGQVQTEFADITSTHPTTSFDKSLNGHLSLDYTCIKWLSFERKRKRKHTSSLLVLGTGSGDVLALDVSAGQLSWRINDCHPGGVRAIASSENGSSICTAGADGMVCVIDFMTGNLVEKFKASTKPVSCISVSPDGKTLATAAAQLKIFNCSNHKKIQKFSGHPGSVRCMVFTEDGEYVLSSAVGERYVAVWRIDGAKKQSASCVLAMEHPAVFLDSRCIDSGECDKAGLCVLAISEIGICYLWFGNNIEELRNAKPTKVSLSLDDVSSKNYKGALPAIYAAKLQGIQKPTSGQVFLVYGLLVKPSFQKIIVHSGTDVKLNVSRDGILLPMSQSLVKSKKGIDVHRVTALDRANAEDALLPIPKVFDSHEKEKAFQEFLDKDVIDDLHRSSKDDSLEIEDDMVQSDTDVICMEDRLRSLGMLPSDSDCASKVELCSTLLKGIDLEATLPMKKIRATVVSMVPSEAFKLLEVFLGAWQSRSSSGKYVLPWIYSILVNHGHNVIAQESVTRILDSLDKIAKSRGATLQPLLQLSGRLQLVTSQINKASQTESHSMHELQVEESEDEDEYYHEEEDDASEISSDDES* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2273 618 Pfam Dip2/Utp12 Family 483 573 IPR007148 -
Apr9g2273 618 ProSiteProfiles Trp-Asp (WD) repeats profile. 194 236 IPR001680 GO:0005515
Apr9g2273 618 PANTHER OS03G0300300 PROTEIN 1 617 - -
Apr9g2273 618 Pfam WD domain, G-beta repeat 190 226 IPR001680 GO:0005515
Apr9g2273 618 Gene3D - 10 306 IPR015943 GO:0005515
Apr9g2273 618 Pfam Anaphase-promoting complex subunit 4 WD40 domain 85 165 IPR024977 -
Apr9g2273 618 SMART WD40_4 104 144 IPR001680 GO:0005515
Apr9g2273 618 SMART WD40_4 3 33 IPR001680 GO:0005515
Apr9g2273 618 SMART WD40_4 187 227 IPR001680 GO:0005515
Apr9g2273 618 SMART WD40_4 147 184 IPR001680 GO:0005515
Apr9g2273 618 PANTHER OS03G0300300 PROTEIN 1 617 - -
Apr9g2273 618 MobiDBLite consensus disorder prediction 580 618 - -
Apr9g2273 618 SUPERFAMILY WD40 repeat-like 12 233 IPR036322 GO:0005515
Apr9g2273 618 MobiDBLite consensus disorder prediction 593 618 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2273 109 226 U-box Gene Family AT2G33340 28.689 9.43e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2273 K14546 - gmx:100815458 978.008
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2273 9 30489202 30495095 Apr9g2273 9 30489202 30495095 ECH