Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2264 ATGTGTGGGGGTGCTATCATTTCTGATTTCATCGATACCAACTTGAAGTGTGGCCGGAAATTGACCACCCATCACCTCTGCTCTGAGCTTGACCCTTTCTCTGATCTTCTTGGTTTCGACACCGCCTCTTCTTCCAAACATCATCCAAAGCTCCCTCTTCAGCTTCCCAACAACAAAGTGGCAGTGGTGGCATGTGAGAAGAAAAGAGCGGTAACAGAAAAGGGAAAAGGTAAGAGCGGTGAGAGTGAGAGAAAGAATGAGCGCGTAAGGAAGAACGTGTACAGAGGAATAAGGCAAAGGCCATGGGGCAAGTGGGCGGCGGAGATAAGGGATCCACGTAAGGGTGTAAGAGTATGGCTTGGGACCTTCAACACTGCCGAAGAAGCCGCACGCGCTTACGACGCCGCCGCTAAGCGCATCCGTGGAGACAAGGCCAAGCTCAACTTTCCGAAGAAGCGTTGCTCCACCCCTGACTCCACTCAGCCCATTGGGCTACCGGCTTTCAACCCGCAGGCCCATGATCCTGCCTTCAAGAACCAAATATCGTCGCTGGAATCGTTCCTGGGCCTGGACCATGAGCTGCAGCAGCCACTGGGAGATTGGGACTCCGTCTCCACTGACCTGTGGACTCTGGACGACGTGGTTATGCCCAACCGCCACCTCTTCTGA 669 0.5396 MCGGAIISDFIDTNLKCGRKLTTHHLCSELDPFSDLLGFDTASSSKHHPKLPLQLPNNKVAVVACEKKRAVTEKGKGKSGESERKNERVRKNVYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAAAKRIRGDKAKLNFPKKRCSTPDSTQPIGLPAFNPQAHDPAFKNQISSLESFLGLDHELQQPLGDWDSVSTDLWTLDDVVMPNRHLF* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2264 222 ProSiteProfiles AP2/ERF domain profile. 93 150 IPR001471 GO:0003700|GO:0006355
Apr9g2264 222 Gene3D AP2/ERF domain 93 152 IPR036955 GO:0003700|GO:0006355
Apr9g2264 222 PANTHER DNA-BINDING DOMAIN 1 172 IPR044808 GO:0003700|GO:0009873
Apr9g2264 222 SMART rav1_2 93 156 IPR001471 GO:0003700|GO:0006355
Apr9g2264 222 Pfam AP2 domain 93 142 IPR001471 GO:0003700|GO:0006355
Apr9g2264 222 SUPERFAMILY DNA-binding domain 93 151 IPR016177 GO:0003677
Apr9g2264 222 CDD AP2 94 150 IPR001471 GO:0003700|GO:0006355
Apr9g2264 222 PRINTS Ethylene responsive element binding protein signature 94 105 IPR001471 GO:0003700|GO:0006355
Apr9g2264 222 PRINTS Ethylene responsive element binding protein signature 116 132 IPR001471 GO:0003700|GO:0006355
Apr9g2264 222 PANTHER EREBP TRANSCRIPTION FACTOR 1 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2264 Apr-Chr9 30434202 30435776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2264 1 215 AP2-EREBP Transcription Factor Family AT3G16770 46.947 1.46e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr9g2264 AP2 2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2264 K09286 - gmx:100779626 216.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2264 9 30434202 30435776 Apr9g2264 9 30434202 30435776 ECH
Apr9g2264 9 30434202 30435776 Apr1g2122 1 30698879 30700272 PCT