Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2258 ATGGGCAACGACGACGTCGATGGCAATGGCAAGGAAATCCAATACGAATCAAAAGACTTCGCTCTCAGCGGCAAGATAATGCTAATCGCCATCGTCGTTCTCTTCCTCATTATAATCATAATGCTCTGTCTCCATGTCTATGTCCGATGGCACCTCGTACGCGCTCGCCGCCGACGAAATATCCGCCGCGCTCGCCGACCGCATTTCGTCTTCTACATGGACCCCACTGTCGTCACGGTGGCCTCTCGCGGCCTCCACCGCTCCGTGATCTCTTCCCTCCCAGTCTTCACTTTCTCCCACACCACCCACCCGGACCCAGTGGAATGCGCCGTTTGTTTGTCGGAGTTCGAAAATGGGGAAACGGGTCGGGTCTTACCCAAATGCAACCACAGTTTCCACATTGATTGCATCGACATGTGGTTCCAGTCTCACTCCACGTGTCCTCTTTGCAGGTCACCTGTGGAGACCCGAACAGACATTGAGGCCCGACCCGAAGGTGTGGCTTTGTCTGAACCGGAATCGAGTTTAAGTTCTGAATTGGGGGTGGGAGGGGAAGAACTGAACGGGTATGGAGCGGTGGGTTCTTCTTCATTGCGTGTTGAGGTGCAAGGCAGGAACCATAGCTTGAGGGTGGAGTCGGAGTCGTCGTTTCGGTCGCCGGTGAGTCGCATATTGTCGTTTAAGAGGATTCTTAGCAGGGAGAAGACGGCAAGCGTTTCGGGTTGTGGTGGCGGGTGCAGCGACATGACCGATTTAGACACAGAACGATGA 771 0.5447 MGNDDVDGNGKEIQYESKDFALSGKIMLIAIVVLFLIIIIMLCLHVYVRWHLVRARRRRNIRRARRPHFVFYMDPTVVTVASRGLHRSVISSLPVFTFSHTTHPDPVECAVCLSEFENGETGRVLPKCNHSFHIDCIDMWFQSHSTCPLCRSPVETRTDIEARPEGVALSEPESSLSSELGVGGEELNGYGAVGSSSLRVEVQGRNHSLRVESESSFRSPVSRILSFKRILSREKTASVSGCGGGCSDMTDLDTER* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2258 256 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Apr9g2258 256 Pfam Ring finger domain 108 151 IPR001841 -
Apr9g2258 256 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 15 199 - -
Apr9g2258 256 CDD RING-H2_EL5_like 108 151 - -
Apr9g2258 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 157 IPR013083 -
Apr9g2258 256 SMART ring_2 109 150 IPR001841 -
Apr9g2258 256 SMART FANCL_C_2 105 159 - -
Apr9g2258 256 PANTHER RING-H2 FINGER PROTEIN ATL64 15 199 - -
Apr9g2258 256 SUPERFAMILY RING/U-box 87 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2258 Apr-Chr9 30405718 30406902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2258 17 256 Rapid Response to Elicitors AT3G16720 47.842 1.82e-62 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2258 - - aprc:113848270 464.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2258 9 30405718 30406902 Apr9g2258 9 30405718 30406902 ECH
Apr9g2258 9 30405718 30406902 Apr1g2130 1 30803906 30805329 PCT