Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2225 ATGGTGGATAACGTTGGAGGCAGTTCTTCTAATGTTGACAATAGTGGCATCAAGGAACAAGACCGGTTGTTGCCAATAGCCAATGTTGGGAGGATCATGAAGCAGATTTTACCTCCAAATGCAAAAATCTCAAAGGAATCGAAGGAAACAATGCAAGAGTGTGTGTCGGAGTTCATAAGCTTTGTAACCAGTGAGGCTTCAGAGAAGTGCAGGAAGGAAAGGAGGAAGACTGTGAACGGTGATGATATTTGCTGGGCATTGGGGTCCCTTGGTTTTGATGACTATGCAGAGCCAATGAGAAGGTATTTGCACAGATATAGAGAGCTAGAGGTAGATAGAACCACCAACCAAGATAGAGGAAATAGCACCCCAGAAGAGAAGGATCATGATCACTATTCAAGTTATCCCCCAAGCTAG 417 0.4412 MVDNVGGSSSNVDNSGIKEQDRLLPIANVGRIMKQILPPNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGSLGFDDYAEPMRRYLHRYRELEVDRTTNQDRGNSTPEEKDHDHYSSYPPS* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2225 138 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Apr9g2225 138 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 129 - -
Apr9g2225 138 SUPERFAMILY Histone-fold 20 129 IPR009072 GO:0046982
Apr9g2225 138 MobiDBLite consensus disorder prediction 108 138 - -
Apr9g2225 138 ProSitePatterns NF-YB/HAP3 subunit signature. 54 70 IPR003956 GO:0005634|GO:0006355|GO:0043565
Apr9g2225 138 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 129 IPR027113 GO:0001228|GO:0006355|GO:0016602
Apr9g2225 138 Gene3D Histone, subunit A 10 134 IPR009072 GO:0046982
Apr9g2225 138 PRINTS CCAAT-binding transcription factor subunit A signature 51 69 - -
Apr9g2225 138 PRINTS CCAAT-binding transcription factor subunit A signature 70 88 - -
Apr9g2225 138 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2225 Apr-Chr9 30155838 30156254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2225 17 120 CCAAT-HAP3 Transcription Factor Family AT2G47810 74.038 2.03e-57 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Apr9g2225 CBFD_NFYB_HMF 4.8e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2225 K08065 - gmx:100786046 215.312
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2225 9 30155838 30156254 Apr1g2168 1 31152741 31153279 PCT