Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2219 ATGTTCAGTCCGAGCATGGATTCTGCGAGAGATGCGGGTGGTGTGGCAGGGACGGTGCTAATTCCCATGCGCTTTGTGTGGCCATATGGAGGAAGAATTGTGTATCTAAGTGGTTCTTTCACACGGTGGTCTGAACTTCTACAAATGTCGCCAGTGGAAGGCTGCCCAACCGTGTTTCAAGTTATTCATAGCTTGGCCCCTGGTTATCATCAGTACAAATTTTTTGTTGATGGAGAATGGCGGCATGATGAGCATCAGCCTTATATGTCTGGAGAATATGGGATAGTTAACACTGTTTTATTGGCTACTGATCCTAACATGGTACCTGTTTTAACTCCAGACACAGTTTCTGGATCTAACATGGATGTGGATAATGAGGCTTTTCGACGTATGGTAAGAGTTAGTCAGACTTACACAAGAATATCAGATGTTGATGTACAGACCTCTCGGCAGCGTATATCTGCATTCCTATCTATGCGCACAGCCTATGAATTACTTCCTGAGTCAGGCAAGGTTGTTACCTTGGATGTTGATCTGCCTGTGAAACAGGCATTTCACATACTGCATGAGCAGGGCATTCCCATGGCTCCTCTTTGGGACTTCTGCAAGGGGCAGTTTGTTGGAGTTCTTAGTGCTTTGGATTTTATTTTAATTTTAAGAGAGTTAGGAAATCATGGGTCCAATCTGACAGAAGAGGAGCTTGAAACACATACCATATCAGCTTGGAAAGAAGGAAAATGGTCAGCATTTTCAAGACGTTTTATCCATCAGGCGGGGCCATATGATAATTTGAAAGATATTGCTTTGAAGATCCTACAAAATGAAATTTCAACAGTTCCTGTTGTCCATTCTTCTTCTGAAGATGGTTCATTCCCCCAGCTACTACATCTTGCTTCACTTTCAGGAATCCTCAAGTGCATTTGCAGGTATTTTAGGAATTGTTCTAGCTCATTGCCTATACTACAACTTCCGATTTGTGCAATTCCTGTGGGCACATGGGTGCCCAGAATTGGGGAGTCAAATCTTCGGCCTCTAGCAATGTTGAGACCAAGTGCTTCGCTTACATCAGCCCTAAACTTGTTAGTTCAAGGTCAAGTAAGTTCAATACCAATAGTTGATGACAGTGATTCATTACTGGATATATATTGTCGAAGTGATATAACAGCATTGGCAAAGGACAGAGCTTACACACATTATAATCTTGATGAAATGACTGTTCATCAGGCATTGCAATTGGGCCAAGATTTGTACAATCCATACGAGCTGAGAAGTCAAAGATGTCAAATGTGTTTGCGAACTGATTCTCTGCATAAAGTGATGGAGCGTTTGGCAAATCCAGGTGTGAGGCGGCTTGTTATTGTGGAAGCTGGCAGCAAGCGTGTAGAAGGCATCATATCACTGAGTGACATATTCAAGTTCTTCCTTGGTTAA 1431 0.4263 MFSPSMDSARDAGGVAGTVLIPMRFVWPYGGRIVYLSGSFTRWSELLQMSPVEGCPTVFQVIHSLAPGYHQYKFFVDGEWRHDEHQPYMSGEYGIVNTVLLATDPNMVPVLTPDTVSGSNMDVDNEAFRRMVRVSQTYTRISDVDVQTSRQRISAFLSMRTAYELLPESGKVVTLDVDLPVKQAFHILHEQGIPMAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELETHTISAWKEGKWSAFSRRFIHQAGPYDNLKDIALKILQNEISTVPVVHSSSEDGSFPQLLHLASLSGILKCICRYFRNCSSSLPILQLPICAIPVGTWVPRIGESNLRPLAMLRPSASLTSALNLLVQGQVSSIPIVDDSDSLLDIYCRSDITALAKDRAYTHYNLDEMTVHQALQLGQDLYNPYELRSQRCQMCLRTDSLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDIFKFFLG* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2219 476 CDD E_set_AMPKbeta_like_N 22 100 - -
Apr9g2219 476 Pfam Glycogen recognition site of AMP-activated protein kinase 21 103 IPR032640 -
Apr9g2219 476 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 11 476 - -
Apr9g2219 476 ProSiteProfiles CBS domain profile. 341 403 IPR000644 -
Apr9g2219 476 Gene3D Immunoglobulins 21 113 IPR013783 -
Apr9g2219 476 SMART cbs_1 344 392 IPR000644 -
Apr9g2219 476 SMART cbs_1 426 475 IPR000644 -
Apr9g2219 476 SMART cbs_1 171 220 IPR000644 -
Apr9g2219 476 ProSiteProfiles CBS domain profile. 165 227 IPR000644 -
Apr9g2219 476 SUPERFAMILY CBS-domain pair 342 475 IPR046342 -
Apr9g2219 476 SUPERFAMILY CBS-domain pair 151 313 IPR046342 -
Apr9g2219 476 ProSiteProfiles CBS domain profile. 422 476 IPR000644 -
Apr9g2219 476 Pfam CBS domain 429 475 IPR000644 -
Apr9g2219 476 Pfam CBS domain 343 388 IPR000644 -
Apr9g2219 476 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 11 476 - -
Apr9g2219 476 SUPERFAMILY E set domains 21 102 IPR014756 -
Apr9g2219 476 Gene3D - 142 316 IPR046342 -
Apr9g2219 476 Gene3D - 324 476 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2219 Apr-Chr9 30101498 30111137 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2219 11 111 Protein tyrosine phosphatase (PTP) family AT3G01510 30.769 8.22e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2219 - - aprc:113874669 949.118
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2219 9 30101498 30111137 Apr1g2172 1 31202876 31211903 PCT