Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2216 ATGGAGCGGTACGGCCGAGCCAGCGAAGGGTCGCAGTCTGATCCGTCGCCGGAATGGACCGTCGCCGGTGGAGACACAGGTCTCGAAGAGTCCTCGTGGCAACCGGGATTTGCCGCCGGCGAATCGTACCCTCTGCGTCCTGACGAGGCTGATTGTATCTACTATTTGAGGACCGGTTCTTGCGGTTACGGTTCGCGGTGTCGCTTCAACCATCCTCCTAAGCGTGCCTCTGTTATTGGAGCTGGGACGAGGACTGGAGGGGAGTATCCAGAGCGAGTGGGACAGCCTGTGTGCCAGTATTATATGAGGACTGGATCATGCAAATTTGGTGCATCCTGCAAGTATCACCATCCTAGGCAGGCAGCAGGCACTGCTAACCCTGTGTCACTAAATTATTATGGATATCCATTGCGAATGGGTGAGAAAGAGTGTTCCTATTATGTGAAGACAGGACACTGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCACAGCCTGCTGGCGTCCAAATTGTAGCACCGTCACCAGTTCCCCCAGTTTCACCTCTTCCGGTACCAGTACCTTCACCAATATATCCAACTGTACAGTCCCCATCTGGTCCTTCATCACAACAATATGGTGTATTTGTTGCAAGGCCTCCTATGCTACCTGGCTCAGTAGTCCAGGGCCCCTATGGGCCTGTTGTAGTGTCCCCTGCCATGGTCCCTTTTTCTGGCTGGGGTCCTTACCAGGCTCCTGCAACAAGCCCTGTACTTCCTTCTAGTACTCCATCTAGTGTTGGTTCAACACAGATTTATGGGATTACCCAGCTACCTTCATCAGCAACAGGCTATACTGGACCTTATCAACCTTCCGGTCCCTCAATTGGTTCTTTGGGCACTAGTCAGAAGGAGCATCCATTTCCAGAAAGGCCTGATCAACCAGAATGTCATTATTACATGAAAACAGGGGAGTGTAAATTTGGTCCATCATGTAGATATCATCATCCACCAGACAAGAGTGCACCAAAAGCAAATGTGATCCTTAGTCCTGTGGGCCTTCCTCTGCGTCCGGGGGCACCACCTTGCACTCATTATACACAGCGTGGAGTTTGTAAGTTTGGTTCTGCATGCAAATTTGATCATCCTATGGGATCACTGAGTTATAGTCCATCTGCCTCGTCCCTGGCTGATATGCCGGTTGCACCTTATCCTGTGGGTTCTGCAATTGGTACTCTTGCACCATCATCTTCATCATCAGAATTGCGGCCTGAACTTGGTGCAGGATCTAGCAAGGAGTCTGTTTCATCCAGAATGTCTTCATCAATGAGCACATCGACTGCATCAGTTGGCTTGACCTTGTCAACTGCTGGAGCCGTTTCTCAGTCAAGCACTCAACCATCTGCTCAGAGTTCCAGTTCTTCTACAACTACCAATGCCACCACAAGTAGCACTGTCTCTCACACCTCAAGCTAA 1455 0.5024 MERYGRASEGSQSDPSPEWTVAGGDTGLEESSWQPGFAAGESYPLRPDEADCIYYLRTGSCGYGSRCRFNHPPKRASVIGAGTRTGGEYPERVGQPVCQYYMRTGSCKFGASCKYHHPRQAAGTANPVSLNYYGYPLRMGEKECSYYVKTGHCKFGATCKFHHPQPAGVQIVAPSPVPPVSPLPVPVPSPIYPTVQSPSGPSSQQYGVFVARPPMLPGSVVQGPYGPVVVSPAMVPFSGWGPYQAPATSPVLPSSTPSSVGSTQIYGITQLPSSATGYTGPYQPSGPSIGSLGTSQKEHPFPERPDQPECHYYMKTGECKFGPSCRYHHPPDKSAPKANVILSPVGLPLRPGAPPCTHYTQRGVCKFGSACKFDHPMGSLSYSPSASSLADMPVAPYPVGSAIGTLAPSSSSSELRPELGAGSSKESVSSRMSSSMSTSTASVGLTLSTAGAVSQSSTQPSAQSSSSSTTTNATTSSTVSHTSS* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2216 484 SUPERFAMILY CCCH zinc finger 354 380 IPR036855 GO:0046872
Apr9g2216 484 MobiDBLite consensus disorder prediction 276 306 - -
Apr9g2216 484 MobiDBLite consensus disorder prediction 1 35 - -
Apr9g2216 484 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
Apr9g2216 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Apr9g2216 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 165 IPR000571 GO:0046872
Apr9g2216 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 353 377 IPR000571 GO:0046872
Apr9g2216 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 331 IPR000571 GO:0046872
Apr9g2216 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Apr9g2216 484 PANTHER PROTEIN PHOSPHATASE RELATED 1 470 - -
Apr9g2216 484 Gene3D - 127 174 - -
Apr9g2216 484 SMART c3hfinal6 350 377 IPR000571 GO:0046872
Apr9g2216 484 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Apr9g2216 484 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Apr9g2216 484 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Apr9g2216 484 SMART c3hfinal6 140 165 IPR000571 GO:0046872
Apr9g2216 484 SUPERFAMILY CCCH zinc finger 307 333 IPR036855 GO:0046872
Apr9g2216 484 SUPERFAMILY CCCH zinc finger 49 74 IPR036855 GO:0046872
Apr9g2216 484 MobiDBLite consensus disorder prediction 276 295 - -
Apr9g2216 484 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Apr9g2216 484 MobiDBLite consensus disorder prediction 407 484 - -
Apr9g2216 484 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872
Apr9g2216 484 SUPERFAMILY CCCH zinc finger 138 166 IPR036855 GO:0046872
Apr9g2216 484 SUPERFAMILY CCCH zinc finger 95 120 IPR036855 GO:0046872
Apr9g2216 484 Gene3D - 46 126 - -
Apr9g2216 484 ProSiteProfiles Zinc finger C3H1-type profile. 350 378 IPR000571 GO:0046872
Apr9g2216 484 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Apr9g2216 484 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 470 - -
Apr9g2216 484 Gene3D - 303 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2216 Apr-Chr9 30066638 30072066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2216 1 446 C2H2 Transcription Factor Family AT5G18550 56.674 1.12e-157 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr9g2216 zf-CCCH 1.6e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2216 - - gmx:100789405 744.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2216 9 30066638 30072066 Apr1g1656 1 26234232 26246579 PCT