Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr9g2216 | ATGGAGCGGTACGGCCGAGCCAGCGAAGGGTCGCAGTCTGATCCGTCGCCGGAATGGACCGTCGCCGGTGGAGACACAGGTCTCGAAGAGTCCTCGTGGCAACCGGGATTTGCCGCCGGCGAATCGTACCCTCTGCGTCCTGACGAGGCTGATTGTATCTACTATTTGAGGACCGGTTCTTGCGGTTACGGTTCGCGGTGTCGCTTCAACCATCCTCCTAAGCGTGCCTCTGTTATTGGAGCTGGGACGAGGACTGGAGGGGAGTATCCAGAGCGAGTGGGACAGCCTGTGTGCCAGTATTATATGAGGACTGGATCATGCAAATTTGGTGCATCCTGCAAGTATCACCATCCTAGGCAGGCAGCAGGCACTGCTAACCCTGTGTCACTAAATTATTATGGATATCCATTGCGAATGGGTGAGAAAGAGTGTTCCTATTATGTGAAGACAGGACACTGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCACAGCCTGCTGGCGTCCAAATTGTAGCACCGTCACCAGTTCCCCCAGTTTCACCTCTTCCGGTACCAGTACCTTCACCAATATATCCAACTGTACAGTCCCCATCTGGTCCTTCATCACAACAATATGGTGTATTTGTTGCAAGGCCTCCTATGCTACCTGGCTCAGTAGTCCAGGGCCCCTATGGGCCTGTTGTAGTGTCCCCTGCCATGGTCCCTTTTTCTGGCTGGGGTCCTTACCAGGCTCCTGCAACAAGCCCTGTACTTCCTTCTAGTACTCCATCTAGTGTTGGTTCAACACAGATTTATGGGATTACCCAGCTACCTTCATCAGCAACAGGCTATACTGGACCTTATCAACCTTCCGGTCCCTCAATTGGTTCTTTGGGCACTAGTCAGAAGGAGCATCCATTTCCAGAAAGGCCTGATCAACCAGAATGTCATTATTACATGAAAACAGGGGAGTGTAAATTTGGTCCATCATGTAGATATCATCATCCACCAGACAAGAGTGCACCAAAAGCAAATGTGATCCTTAGTCCTGTGGGCCTTCCTCTGCGTCCGGGGGCACCACCTTGCACTCATTATACACAGCGTGGAGTTTGTAAGTTTGGTTCTGCATGCAAATTTGATCATCCTATGGGATCACTGAGTTATAGTCCATCTGCCTCGTCCCTGGCTGATATGCCGGTTGCACCTTATCCTGTGGGTTCTGCAATTGGTACTCTTGCACCATCATCTTCATCATCAGAATTGCGGCCTGAACTTGGTGCAGGATCTAGCAAGGAGTCTGTTTCATCCAGAATGTCTTCATCAATGAGCACATCGACTGCATCAGTTGGCTTGACCTTGTCAACTGCTGGAGCCGTTTCTCAGTCAAGCACTCAACCATCTGCTCAGAGTTCCAGTTCTTCTACAACTACCAATGCCACCACAAGTAGCACTGTCTCTCACACCTCAAGCTAA | 1455 | 0.5024 | MERYGRASEGSQSDPSPEWTVAGGDTGLEESSWQPGFAAGESYPLRPDEADCIYYLRTGSCGYGSRCRFNHPPKRASVIGAGTRTGGEYPERVGQPVCQYYMRTGSCKFGASCKYHHPRQAAGTANPVSLNYYGYPLRMGEKECSYYVKTGHCKFGATCKFHHPQPAGVQIVAPSPVPPVSPLPVPVPSPIYPTVQSPSGPSSQQYGVFVARPPMLPGSVVQGPYGPVVVSPAMVPFSGWGPYQAPATSPVLPSSTPSSVGSTQIYGITQLPSSATGYTGPYQPSGPSIGSLGTSQKEHPFPERPDQPECHYYMKTGECKFGPSCRYHHPPDKSAPKANVILSPVGLPLRPGAPPCTHYTQRGVCKFGSACKFDHPMGSLSYSPSASSLADMPVAPYPVGSAIGTLAPSSSSSELRPELGAGSSKESVSSRMSSSMSTSTASVGLTLSTAGAVSQSSTQPSAQSSSSSTTTNATTSSTVSHTSS* | 485 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr9g2216 | 484 | SUPERFAMILY | CCCH zinc finger | 354 | 380 | IPR036855 | GO:0046872 | |
Apr9g2216 | 484 | MobiDBLite | consensus disorder prediction | 276 | 306 | - | - | |
Apr9g2216 | 484 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Apr9g2216 | 484 | ProSiteProfiles | Zinc finger C3H1-type profile. | 304 | 332 | IPR000571 | GO:0046872 | |
Apr9g2216 | 484 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 48 | 73 | IPR000571 | GO:0046872 | |
Apr9g2216 | 484 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 140 | 165 | IPR000571 | GO:0046872 | |
Apr9g2216 | 484 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 353 | 377 | IPR000571 | GO:0046872 | |
Apr9g2216 | 484 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 306 | 331 | IPR000571 | GO:0046872 | |
Apr9g2216 | 484 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 95 | 119 | IPR000571 | GO:0046872 | |
Apr9g2216 | 484 | PANTHER | PROTEIN PHOSPHATASE RELATED | 1 | 470 | - | - | |
Apr9g2216 | 484 | Gene3D | - | 127 | 174 | - | - | |
Apr9g2216 | 484 | SMART | c3hfinal6 | 350 | 377 | IPR000571 | GO:0046872 | |
Apr9g2216 | 484 | SMART | c3hfinal6 | 46 | 73 | IPR000571 | GO:0046872 | |
Apr9g2216 | 484 | SMART | c3hfinal6 | 92 | 119 | IPR000571 | GO:0046872 | |
Apr9g2216 | 484 | SMART | c3hfinal6 | 304 | 331 | IPR000571 | GO:0046872 | |
Apr9g2216 | 484 | SMART | c3hfinal6 | 140 | 165 | IPR000571 | GO:0046872 | |
Apr9g2216 | 484 | SUPERFAMILY | CCCH zinc finger | 307 | 333 | IPR036855 | GO:0046872 | |
Apr9g2216 | 484 | SUPERFAMILY | CCCH zinc finger | 49 | 74 | IPR036855 | GO:0046872 | |
Apr9g2216 | 484 | MobiDBLite | consensus disorder prediction | 276 | 295 | - | - | |
Apr9g2216 | 484 | ProSiteProfiles | Zinc finger C3H1-type profile. | 92 | 120 | IPR000571 | GO:0046872 | |
Apr9g2216 | 484 | MobiDBLite | consensus disorder prediction | 407 | 484 | - | - | |
Apr9g2216 | 484 | ProSiteProfiles | Zinc finger C3H1-type profile. | 138 | 166 | IPR000571 | GO:0046872 | |
Apr9g2216 | 484 | SUPERFAMILY | CCCH zinc finger | 138 | 166 | IPR036855 | GO:0046872 | |
Apr9g2216 | 484 | SUPERFAMILY | CCCH zinc finger | 95 | 120 | IPR036855 | GO:0046872 | |
Apr9g2216 | 484 | Gene3D | - | 46 | 126 | - | - | |
Apr9g2216 | 484 | ProSiteProfiles | Zinc finger C3H1-type profile. | 350 | 378 | IPR000571 | GO:0046872 | |
Apr9g2216 | 484 | ProSiteProfiles | Zinc finger C3H1-type profile. | 46 | 74 | IPR000571 | GO:0046872 | |
Apr9g2216 | 484 | PANTHER | TRANSCRIPTION FACTOR C3H FAMILY-RELATED | 1 | 470 | - | - | |
Apr9g2216 | 484 | Gene3D | - | 303 | 381 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr9g2216 | Apr-Chr9 | 30066638 | 30072066 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr9g2216 | 1 | 446 | C2H2 Transcription Factor Family | AT5G18550 | 56.674 | 1.12e-157 | 453 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Apr9g2216 | zf-CCCH | 1.6e-07 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr9g2216 | - | - | gmx:100789405 | 744.962 |