Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2215 ATGTCAACCTCTAGAACCTCAGATACACCCTTCAAAGGATATGATCCAAACCAAACCCAAATGTGCCTATCACTCCTTCAACGCAACACATCTCCGTGTGGTGAGAGAAGAGGCAGAAGGAAACAAGCAGAACCAGGAAGGTTTCTTGGAGTGAGGAGGCGCCCTTGGGGTCGCTATGCTGCTGAAATTAGAGACCCTTCAACCAAAGAAAGGCATTGGCTTGGCACATTTGACACTGCTCAAGAAGCAGCTCTTGCTTATGACAGAGCTGCTCTCTCCATGAAAGGAAGCCAAGCAAGAACCAACTTTGTTTACACTGACAACATCAACTTTCACTCTCTCCTTTCTCCCATGGATGCTCAATCTCTCTTGCCAGCTTCTCAGCTCCTCACTAACACTCATATCAAACAACCAACCAATCAAAATAGCCTCTCTCAGCTTCATACTTCAAACTGTGCAAACCCCTCCATGCTGAACAATGACGTGTGTGTTGAAACCGCATTTGGGTCAGCTACGGATGATAATTTTTTCTTTTCCAATGATTCTTCTAACTCGGGCTATCTTGAATGCATTGTTCCTGATAACTGTTTCAGACCTGCCTCTTCCAGTACCAACAGTTCATCAAACTCCAGAAAGAGCAATGTGAGTGCCTCAAGTGATCAAAAGGTTAGCTCAATCAACAAAAACTCCATGGAGAGTCATCCACCACACGCTGACATGACTTCATTCTCTAAAGAAACCATGAAAATGCCACCAAGGGAATCTAACTTTTCAGAATTTTCTTTTCCAAGTCAAGGATTCTGGGATGATCAGCACTCATGGGATTGGAATAGCAGTGAACTTTCAGCTATATTTAATAACCCATTAAGTGTTGAAGATGGGTGCATGGATACACTGTACCCCATCACGGATAGTCCAAGTCCAAGCTATGGCCTATTGAATCAAGCTGCTTCTTCAACTAATTGTTCTCCATCACTTCCACCCTTTGGGGACGTAGACTTGGGATACCCACTCTTCTGA 1020 0.4412 MSTSRTSDTPFKGYDPNQTQMCLSLLQRNTSPCGERRGRRKQAEPGRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAQEAALAYDRAALSMKGSQARTNFVYTDNINFHSLLSPMDAQSLLPASQLLTNTHIKQPTNQNSLSQLHTSNCANPSMLNNDVCVETAFGSATDDNFFFSNDSSNSGYLECIVPDNCFRPASSSTNSSSNSRKSNVSASSDQKVSSINKNSMESHPPHADMTSFSKETMKMPPRESNFSEFSFPSQGFWDDQHSWDWNSSELSAIFNNPLSVEDGCMDTLYPITDSPSPSYGLLNQAASSTNCSPSLPPFGDVDLGYPLF* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2215 339 MobiDBLite consensus disorder prediction 201 243 - -
Apr9g2215 339 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Apr9g2215 339 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Apr9g2215 339 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 339 - -
Apr9g2215 339 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Apr9g2215 339 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
Apr9g2215 339 SUPERFAMILY DNA-binding domain 48 104 IPR016177 GO:0003677
Apr9g2215 339 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 339 - -
Apr9g2215 339 Pfam AP2 domain 50 96 IPR001471 GO:0003700|GO:0006355
Apr9g2215 339 MobiDBLite consensus disorder prediction 201 237 - -
Apr9g2215 339 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Apr9g2215 339 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2215 Apr-Chr9 30063834 30064853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2215 1 213 AP2-EREBP Transcription Factor Family AT5G18560 47.126 1.15e-59 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr9g2215 AP2 1.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2215 - - gmx:100812047 481.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2215 9 30063834 30064853 Apr1g1657 1 26251029 26251991 PCT