Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2201 ATGGGGTGTGTGTTTGGGAAAGAGAAAGAGGCATCAGAGAGAAGGAGGGAAGAGAGGAAGGAAGAAGTGGAAGTTGGAAGAGAAGTAGATGGTGAGGTTGAAAATGGTGGGAATGGGAAGGAGGGTGGAGAGGAGGGGAAGAGCAAGAGGCCAAAGGGGGAGAAAAGGCGATCTTCAAAGCCGAATCCGAGGTTAAGCAATCCTCCTAACAATGTACATGGTGAGCAAGTGGCTGCAGGGTGGCCCTCTTGGCTCTCCAAGGTAGCTGGGGAAGCTATAAATGGATTGACCCCTCGAAGAGCTGACACTTTTGAGAAGCTTAACAAGATTGGACAAGGTACATATAGCAATGTTTACAAAGCAAAGGATACTTTGACAGGGAAAATTGTAGCCTTAAAGAAGGTTCGCTTTGACAATTTAGAGCCCGAGAGTGTGAAATTCATGGCCAGAGAGATCCTTATTCTGCGTCGTCTTGATCATCCCAATGTTGTCAAACTGGAAGGCTTAGTGACTTCAAGGATGTCATGCAGTTTGTACCTTGTGTTTGAATACATGGAGCATGATTTGGCTGGACTTGCTACAAGCCCAACAATTAAGTTCACAGAGTCTCAGCTATTTTCTGGATTGGAACACTGTCACAACCGTCACGTGTTGCATCGTGACATAAAAGGGTCAAACCTTCTTGTTGACAATGAAGGAATTCTTAGGATAGCTGATTTTGGATTAGCTTCCTTCTTTGATCCTAATTACCAGCACCCTATGACCAGTAGGGTGGTTACTTTATGGTATCGACCTCCGGAACTTCTCCTTGGAGCCACTGATTATGGTGTAGGAGTGGACCTCTGGAGTGCTGGCTGCATTCTTGCTGAATTGTTGGCTGGCAAGCCTATTATGCCTGGTAGAACAGAGGTGGAACAGTTACATAAGATATTTAAGCTATGTGGTTCTCCTTCTGACGAATATTGGAAAAAGTCAAAGTTGCCTCATGCTACTATTTTTAAGCCTCAACAATCGTACAAACGGTGCATAGCAGAAACATTTAAGGATTTCCCAGCATCATCCCTGCCATTAATTGAGACCCTTCTCGCAATTGATCCAGCTGAACGTCAAACTGCCACCGCTGCATTGCATAGTGAGTTCTTTACAACAAAACCTTATGCCTGTGAACCCTCCAGCCTTCCAAAATATCCTCCCAGCAAGGAGATGGATGCAAAGTTACGGGATGAAGAAACTAGAAGATTGAGAGCTGCTAGCAAAGCTAATGCTAATGGTGTCAAGAAATCTCGTCCACGTGATCGGGGTGGGAGGGGAATTCCAGTTCCAGATGCCAATGCTGAGCTGCAGGCAAATATTGATAGATGGAGACTGATAACACATGCAAATGCCAAGAGCAAGAGTGAAAAGTTTCCCCCTCCCCATGAAGACGGAACTCTAGGCTATACTTTGGGTTCTTCACATCACATGGATCCAGTTTTTGATCCTCCTGATATTCCATTTAGTTCCACAAACTTATCATATCCCAAAGTAAATATCCAGACCTGGTCCGGCCCATTGGTGGATCCTAGTGTAGGTGCACCAAGGAGAAAGAAGAACATGCATGGGGATGGGCACACACAATCAAAGACATCAAAGGACTCGTATAGATAG 1647 0.4511 MGCVFGKEKEASERRREERKEEVEVGREVDGEVENGGNGKEGGEEGKSKRPKGEKRRSSKPNPRLSNPPNNVHGEQVAAGWPSWLSKVAGEAINGLTPRRADTFEKLNKIGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLATSPTIKFTESQLFSGLEHCHNRHVLHRDIKGSNLLVDNEGILRIADFGLASFFDPNYQHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSDEYWKKSKLPHATIFKPQQSYKRCIAETFKDFPASSLPLIETLLAIDPAERQTATAALHSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEETRRLRAASKANANGVKKSRPRDRGGRGIPVPDANAELQANIDRWRLITHANAKSKSEKFPPPHEDGTLGYTLGSSHHMDPVFDPPDIPFSSTNLSYPKVNIQTWSGPLVDPSVGAPRRKKNMHGDGHTQSKTSKDSYR* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2201 548 ProSiteProfiles Protein kinase domain profile. 104 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g2201 548 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Apr9g2201 548 CDD STKc_CDK9_like 104 381 - -
Apr9g2201 548 PANTHER CELL DIVISION PROTEIN KINASE 2 534 - -
Apr9g2201 548 Gene3D Phosphorylase Kinase; domain 1 92 186 - -
Apr9g2201 548 ProSitePatterns Protein kinases ATP-binding region signature. 110 133 IPR017441 GO:0005524
Apr9g2201 548 MobiDBLite consensus disorder prediction 7 52 - -
Apr9g2201 548 MobiDBLite consensus disorder prediction 526 548 - -
Apr9g2201 548 MobiDBLite consensus disorder prediction 462 494 - -
Apr9g2201 548 MobiDBLite consensus disorder prediction 1 76 - -
Apr9g2201 548 MobiDBLite consensus disorder prediction 417 444 - -
Apr9g2201 548 PANTHER CYCLIN-DEPENDENT KINASE 2 534 - -
Apr9g2201 548 SUPERFAMILY Protein kinase-like (PK-like) 99 386 IPR011009 -
Apr9g2201 548 SMART serkin_6 104 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g2201 548 MobiDBLite consensus disorder prediction 512 548 - -
Apr9g2201 548 Pfam Protein kinase domain 104 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g2201 548 Gene3D Transferase(Phosphotransferase) domain 1 187 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2201 Apr-Chr9 29958449 29963375 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2201 99 419 Core Cell Cycle Gene Families AT5G10270 49.709 5.01e-108 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Apr9g2201 Pkinase 7.5e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2201 K08819 - gmx:100791757 944.88