Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2198 ATGGAGTTCGGGAGTGATGGGTTGGAGCAGAGTTGGTGGGCCAACATGCCTCAGGAGCTTCTCAGAGAGGTTCTCCTCAAAATTGAGTCGTCGGAGACCACGTGGCCACCCCGGAAGAACGTGGTGGCTTGCGCCGGAGTGTGCCGCACATGGAGACACATCATCAAGGAGATCGTTAAGCCACCTCAACTCTCTTCCATCATAACCTTCCCCATCTCTCTCAAACAGCCTGGCCCGAAGGAGCACCTACTTCAGTGCTTCATTAGGCGTATCCGTGGCACCCAGACATATTATCTATTTCTCAGTTTATCTGGTGCACTAGCTGATGATGGGAAGTTCCTTCTGGCTGCACGCAAGTTTAGACGCCCCACCTGCACGGATTATATTATCTCCTTGGATGCAGATGATATGTCCAGGGGAAGCAATGCCTATGTTGGGAAATTGAGATCAAATTTTTTGGGAACCAAGTTCACAATCTATGATAGCCATCTGCCTCATTCGGGGGCAAAGATTACAAAGAGTCGCTCCACTAAGCTTGTGAATCAAAAACAAGTTTCACCAAGGGTCCCTACTGGAAACTATCCCATTGCCCACATCTCATATGAATTGAATGTGCTAGGCTCCAGGGGGCCAAGGAGAATGCATTGTGTGATGGATGCCATTCCTGCTTCTGCAATTGAACCAGGAGGTGTAGCCCCTGCACAGACTGAATTTTCTGTATGCAACATAGATACGCTTCCTTCAATCCCATTTTTCAAGACAAAGTCAACTAATCTGGACAACTCCATATCTGGACACCTTGGTGATAAAAAAGATGATGTGCTAGTGTTGAAAAACAAGGCTCCCAGGTGGCACGAGCAGCTGCAGTGTTGGTGCTTAAACTTTCATGGGCGAGTGACGATTGCTTCAGTTAAGAACTTTCAGCTGGCTGCTCTGCCAGAAAATGGACATGCTGGTTCACAAGAGGATGAAGTTATACTCCAATTTGGAAAAGTTGGGAAGGACTTGTTTACAATGGATTACCGGTACCCTATATCAGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTTGATACCAAGATTGCTTGTGAATGA 1098 0.4718 MEFGSDGLEQSWWANMPQELLREVLLKIESSETTWPPRKNVVACAGVCRTWRHIIKEIVKPPQLSSIITFPISLKQPGPKEHLLQCFIRRIRGTQTYYLFLSLSGALADDGKFLLAARKFRRPTCTDYIISLDADDMSRGSNAYVGKLRSNFLGTKFTIYDSHLPHSGAKITKSRSTKLVNQKQVSPRVPTGNYPIAHISYELNVLGSRGPRRMHCVMDAIPASAIEPGGVAPAQTEFSVCNIDTLPSIPFFKTKSTNLDNSISGHLGDKKDDVLVLKNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLAALPENGHAGSQEDEVILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2198 365 PRINTS Tubby superfamily signature 128 144 IPR000007 -
Apr9g2198 365 PRINTS Tubby superfamily signature 144 168 IPR000007 -
Apr9g2198 365 PRINTS Tubby superfamily signature 193 220 IPR000007 -
Apr9g2198 365 PRINTS Tubby superfamily signature 277 294 IPR000007 -
Apr9g2198 365 PRINTS Tubby superfamily signature 295 311 IPR000007 -
Apr9g2198 365 PRINTS Tubby superfamily signature 322 341 IPR000007 -
Apr9g2198 365 PRINTS Tubby superfamily signature 343 365 IPR000007 -
Apr9g2198 365 Pfam F-box domain 13 59 IPR001810 GO:0005515
Apr9g2198 365 PANTHER TUBBY-RELATED 7 365 - -
Apr9g2198 365 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 7 365 - -
Apr9g2198 365 Pfam Tub family 74 360 IPR000007 -
Apr9g2198 365 ProSitePatterns Tub family signature 2. 350 365 IPR018066 -
Apr9g2198 365 ProSitePatterns Tub family signature 1. 295 308 IPR018066 -
Apr9g2198 365 SUPERFAMILY Tubby C-terminal domain-like 62 365 IPR025659 -
Apr9g2198 365 SUPERFAMILY F-box domain 7 57 IPR036047 GO:0005515
Apr9g2198 365 Gene3D Tubby Protein; Chain A 70 365 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2198 Apr-Chr9 29946891 29949931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2198 6 365 TUB Transcription Factor Family AT2G47900 70.248 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Apr9g2198 Tub 1.2e-109 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2198 K19600 - gmx:100778346 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2198 9 29946891 29949931 Apr1g1675 1 26428160 26432245 PCT