Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2188 ATGGGGAGGTATAGAAGCCGTAGCAGAAGCTGCAGCCCTCGCCGGCGAAGCAGAACCCCACCTCGCGGACGCAAGCGTCACGACGACGATCGCTATGGTGACAGCAGGTCATACAGAGACCGCCGCTCACCTCTTCCTTCTGGCTTACTCGTTCGCAATCTCCCCCTCGATGCTAGGCCTGAGGATCTTAGGATCCCATTCGAGCGCTTTGGCCCTGTGAAGGATGTTTATCTTCCTAAGAATTACTACACTGGTGAGCCCCGGGGCTTTGGATTTGTGAAATATCGATATGGTGAAGATGCGGCGGAGGCAAAGCAACATCTTAATCACACTATCATTGGCGGACGCGAAATAAGAATTGTGTTTGCTGAGGAAAATAGGAAAACTCCTCAAGAAATGCGTCTTAATGCTCGAGGAAGTAGTCGATATGGAGGTGGAAGAAGGAGGGCTCGTTCAAGATCCCCACGGCGCCGTTATCGTTCCTATTCTCGGTCTCCTTCACCAGCAAGGGATGATTCAAGGGATGGTAGGGGTAGGGATGATTATTATTCTCCTGAGCGATCAAGATCTTATTCTAGGTCTCTCTCTCCTAGCGCTGAGAAGGACTACAGGAGGTCCCCTCATCTCAGGCAGAATGGTCGAAGTCCTACTGGTAAGAAGGATCCAATCCCTAGCAGATCAGAGAGTCCTAGGGGTAATGAGCGTAGTCCTTCGAGGTCTTGTTCGCTGTCATACAGTCCACGCTGA 747 0.5141 MGRYRSRSRSCSPRRRSRTPPRGRKRHDDDRYGDSRSYRDRRSPLPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKYRYGEDAAEAKQHLNHTIIGGREIRIVFAEENRKTPQEMRLNARGSSRYGGGRRRARSRSPRRRYRSYSRSPSPARDDSRDGRGRDDYYSPERSRSYSRSLSPSAEKDYRRSPHLRQNGRSPTGKKDPIPSRSESPRGNERSPSRSCSLSYSPR* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2188 248 MobiDBLite consensus disorder prediction 23 41 - -
Apr9g2188 248 MobiDBLite consensus disorder prediction 144 160 - -
Apr9g2188 248 SUPERFAMILY RNA-binding domain, RBD 49 153 IPR035979 GO:0003676
Apr9g2188 248 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 242 - -
Apr9g2188 248 MobiDBLite consensus disorder prediction 1 46 - -
Apr9g2188 248 MobiDBLite consensus disorder prediction 129 248 - -
Apr9g2188 248 MobiDBLite consensus disorder prediction 1 22 - -
Apr9g2188 248 Gene3D - 3 138 IPR012677 -
Apr9g2188 248 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL28 1 242 - -
Apr9g2188 248 SMART rrm1_1 48 121 IPR000504 GO:0003723
Apr9g2188 248 MobiDBLite consensus disorder prediction 229 248 - -
Apr9g2188 248 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 125 IPR000504 GO:0003723
Apr9g2188 248 MobiDBLite consensus disorder prediction 164 187 - -
Apr9g2188 248 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 119 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2188 Apr-Chr9 29860268 29864399 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2188 51 109 Eukaryotic Initiation Factors Gene Family AT3G11400 45.763 6.11e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2188 K12900 - gmx:100788749 280.026