Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2151 ATGGCACAGCTAGTCGCAGTACTCACGACATGTTCACCTCAGTTTGTGTCGGTTCGGCGCATCGGAACTTGGAAACCATCGAACTCGCTCACAAAATGTCCAACCATTCCTTCACCATCATTTTCTGCCTCTCTTCGCTACGCACTGTTTTGCTGCAGAGCCTGCTCCAGTTCTTCTGTCGAATGCAATTTGCCTTCTTCAGCCAAAATCTTCATCAAAGGGCTTCCTCTCTCAACCTCCAAAGGACGTTTGATGAAGGTGTTTTCAGAGTTTGGCGAAGTCAATCTAGTCCAGCTTCCGATAGATAGAGAAAGTGGGCAGTCTTTAGGATTTGCATATATTTGGTTTGCCAAGGAAGAGTGTGCACAATTGGCTGTGAAAGAGATGAATGGAAAGTTTTTTGATGGCAGGTTTATTTATGTTACAATTGCAAAGCCCGGATCATCAAAAAGATCGAAGGGGACAACACCCTACAAATTTTAA 483 0.4431 MAQLVAVLTTCSPQFVSVRRIGTWKPSNSLTKCPTIPSPSFSASLRYALFCCRACSSSSVECNLPSSAKIFIKGLPLSTSKGRLMKVFSEFGEVNLVQLPIDRESGQSLGFAYIWFAKEECAQLAVKEMNGKFFDGRFIYVTIAKPGSSKRSKGTTPYKF* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2151 160 SMART rrm1_1 69 142 IPR000504 GO:0003723
Apr9g2151 160 Gene3D - 56 159 IPR012677 -
Apr9g2151 160 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 146 IPR000504 GO:0003723
Apr9g2151 160 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 44 160 - -
Apr9g2151 160 SUPERFAMILY RNA-binding domain, RBD 57 152 IPR035979 GO:0003676
Apr9g2151 160 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL ISOFORM X1 44 160 - -
Apr9g2151 160 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 139 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2151 Apr-Chr9 29605396 29607572 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2151 70 159 Eukaryotic Initiation Factors Gene Family AT4G34110 30.000 2.50e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2151 - - gmx:100791917 206.453