Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2145 ATGGGAGTTTCATGGAGTAATGCTAACCGAAGAAGAAATACTTACTTTGAGTTTGAGCATTTCCCACCACCCCCTTTCTATTACTCTCCCCCACCATTTTTGCCACCGCCGCAAGGTTACTTTTTTAATTCTTCTTCCACCACCAGCTATGTGGGCCCTTCTTCTTCAAATCATCCTTCACCGCCACCCTATGTTCACAATCAAACGGCCAAGAAGATAAGGAACAATGTCAACTTGCATAAGCACACTCTGCGCCTCCACATCGATCCTCACAACCCTCATCACCACTTAATTTCCTTTGTTTTCGATGCCCTCTATAATGGCAGCATTGCGATCTTCTACTTCGCCAAAGAAGAAGAAAAATGTAGGTTTATTCCGCTATATCCTGATGTGTTTGAGCCAATCACATTCCCCTTTCAACAAGGAGCTGGCCAGAAATTTTGTCAGCCTTCAGGAACAGGCATTGACCTAGGTTTCTTTGAGTTGGATGATCTTTCTAGGCCCTCATATGGAGAAGATGTATTTCCCCTTGTAATATGTGCAGAAACAAGTTTGAGAACTCCTTTGACAGATGAAAATGCATCCCCTCATATGCAAATAACTCAAGCTGTCTTAGATACAAACAATGGTATTCCTTTCCAGGTAAAAGTAGTTAGGCAGATTCTGTGGATTGATGATGTTCGGTACGAGCTGAGAGAGCTATATGGAATAGAAAGTTCAACAGCCGCAGGTTTTGACAATAGTGATCCTGGGAAGGAGTGTGTAATATGCATGACCGAACCCAAAGACACTGCTGTCTTACCTTGCCGACATATGTATATGTGCAGTGACTGTGCCAAAAATTTGCAGCTTCAATCAAATAAATGCCCTATATGCCGTCAACCAATTGAAGAACTTATAGAGATCAAGATAAACAATGGCAATCAGTGA 930 0.4226 MGVSWSNANRRRNTYFEFEHFPPPPFYYSPPPFLPPPQGYFFNSSSTTSYVGPSSSNHPSPPPYVHNQTAKKIRNNVNLHKHTLRLHIDPHNPHHHLISFVFDALYNGSIAIFYFAKEEEKCRFIPLYPDVFEPITFPFQQGAGQKFCQPSGTGIDLGFFELDDLSRPSYGEDVFPLVICAETSLRTPLTDENASPHMQITQAVLDTNNGIPFQVKVVRQILWIDDVRYELRELYGIESSTAAGFDNSDPGKECVICMTEPKDTAVLPCRHMYMCSDCAKNLQLQSNKCPICRQPIEELIEIKINNGNQ* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2145 309 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 54 - -
Apr9g2145 309 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 55 309 - -
Apr9g2145 309 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 253 293 IPR045195 -
Apr9g2145 309 PANTHER MAHOGUNIN 1 54 IPR045194 GO:0061630
Apr9g2145 309 PANTHER MAHOGUNIN 55 309 IPR045194 GO:0061630
Apr9g2145 309 Pfam Zinc finger, C3HC4 type (RING finger) 252 298 - -
Apr9g2145 309 SUPERFAMILY RING/U-box 253 299 - -
Apr9g2145 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 308 IPR013083 -
Apr9g2145 309 ProSiteProfiles Zinc finger RING-type profile. 254 293 IPR001841 -
Apr9g2145 309 SMART ring_2 254 292 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2145 Apr-Chr9 29543419 29546353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2145 14 309 C3H Transcription Factor Family AT3G06140 55.556 7.33e-109 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2145 - - aprc:113847264 600.512