Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2135 ATGTCACTGGGCTTCTCCCTCACACCGTTGCTAAACAACTCCTTCTGGACACCACCATCGGGTGATTTTGCATTTGGTTTTCAGCAGATTGAGGAAGATGGGTTCCTACTAGCCATCTGGTACCACAAAATACCAGAAAAAACCGTTGTCTGGTTTGCCAATGGACAAAACTTAGCAGGAAAAGGATCTAAAATGGAACTTACCTCTGATGGCCAGTTCTGGCTCAAAGATCCCAGTGACAAGCAGATATGGAATCCTAACAATGAAGTTGCTCATGCAGCTCTGCTTGACACTGGCAACCTCGTGCTGAGAGAAATTCTTGAGTATGATGGAGTTTTCAGGCACTATGTTTACCCCAAGAGAAGCAATTCCAGTAAAGAAGGATGGTCCAAGCACTGGACAGTTTCATCATTTTCACCTACAAATATCTGTTTGAGAATCGGTGGAGATCAAGGAAGTGGGGATTGTGGGTTCAATAGCTACTGCACGTATGATGAGACAAAGTTCAGGGCTACTGAACCTGCTTTTTTTAGTTGTAGCTTGTTTAGCTGCATCCTGATTTGGAACCGGAATCCTAAGGTGGCGAAACCTTCCCAATTCAGAACTGGCATGAATCTCACAAGTTACACTTGGGAAGAATTAATCAAAGCAACGAATGGGTTCAATGAAGTACTTGGTCATGGTGCATTTGCAACAGTTTACAAGGGAGTAATCTCAGGATTTGATGAGAAACTCATTGCTGTTAAGAAGCTAGATACTATGTGGAGTGGAAGAGATGAAGAATTCAAAGCAGAAACCAAGATGGTATCCAAAAAGGAAATTGCATTGGCAATAGGACGGGGACTCACTTACCTCCACGATGAGTGTCGCACCCAGATCATACATTGTGACATCAAGCCACAAAACATCTTACTTGACCATGATTACACCGCAAAAATATTTGAATTTGGTTTGGCCAAGCTTTTGAAGCTCGACCATACTCGAACTACCACTGCAGTGAGGGGAACTAAAGGGTATGTTGCCCCTGAATGGTTCAGGAGTATTCCTGTTAGTGTGAAGGTTGACGTTTACAGCCAAGGAATTTTGTTACTAGAGCTCAGCTGTTGTAAGAAGAACTTCTACGTTGCAGATGCTGAGAATGATGAGCTGATGATACTGGCATATTGGGCATATGACTCCTTCAAGGATGGTAATGTGAGGCAGCTGGTGGAAGATGATATAGAAGCATTGGATGAAATGAAGGTGGTGGAAAGGTATGTGATGACTGCTCTCAGATCAACCATCAAGAAAGTGTTACAAATGCTTGAAGGATCTGTGAACGTGCCTATTCCCCCTGATCCTGCCTTTTTGTAA 1353 0.4324 MSLGFSLTPLLNNSFWTPPSGDFAFGFQQIEEDGFLLAIWYHKIPEKTVVWFANGQNLAGKGSKMELTSDGQFWLKDPSDKQIWNPNNEVAHAALLDTGNLVLREILEYDGVFRHYVYPKRSNSSKEGWSKHWTVSSFSPTNICLRIGGDQGSGDCGFNSYCTYDETKFRATEPAFFSCSLFSCILIWNRNPKVAKPSQFRTGMNLTSYTWEELIKATNGFNEVLGHGAFATVYKGVISGFDEKLIAVKKLDTMWSGRDEEFKAETKMVSKKEIALAIGRGLTYLHDECRTQIIHCDIKPQNILLDHDYTAKIFEFGLAKLLKLDHTRTTTAVRGTKGYVAPEWFRSIPVSVKVDVYSQGILLLELSCCKKNFYVADAENDELMILAYWAYDSFKDGNVRQLVEDDIEALDEMKVVERYVMTALRSTIKKVLQMLEGSVNVPIPPDPAFL* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2135 450 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RLK1 2 103 - -
Apr9g2135 450 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RLK1 272 448 - -
Apr9g2135 450 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RLK1 184 271 - -
Apr9g2135 450 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RLK1 103 167 - -
Apr9g2135 450 SUPERFAMILY alpha-D-mannose-specific plant lectins 35 105 IPR036426 -
Apr9g2135 450 ProSitePatterns Protein kinases ATP-binding region signature. 225 250 IPR017441 GO:0005524
Apr9g2135 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 293 305 IPR008271 GO:0004672|GO:0006468
Apr9g2135 450 Gene3D Transferase(Phosphotransferase) domain 1 270 440 - -
Apr9g2135 450 Pfam Protein kinase domain 270 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g2135 450 SUPERFAMILY Protein kinase-like (PK-like) 197 405 IPR011009 -
Apr9g2135 450 ProSiteProfiles Protein kinase domain profile. 145 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g2135 450 Gene3D - 6 118 IPR036426 -
Apr9g2135 450 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 272 448 - -
Apr9g2135 450 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 2 103 - -
Apr9g2135 450 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 103 167 - -
Apr9g2135 450 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 184 271 - -
Apr9g2135 450 Gene3D Phosphorylase Kinase; domain 1 187 269 - -
Apr9g2135 450 SMART blect_4 7 112 IPR001480 -
Apr9g2135 450 SMART serkin_6 219 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g2135 450 ProSiteProfiles Bulb-type lectin domain profile. 1 116 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2135 Apr-Chr9 29480966 29483199 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2135 206 437 Receptor kinase-like Gene Family AT1G71830 32.653 1.31e-38 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Apr9g2135 Pkinase 6.1e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2135 - - aprc:113874651 930.243