Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2131 ATGGCAAATTTCACCTCCTCTTTTCTTTCTCCTCCGTCTATGTCATACATTGCAACTTCACTACCTTCTGCTGCTTTCGATGACACTTCCGACGACGCCTGCAGCATATGTCTCGAGCCCTTCAGCACCGTTGACCCTGCCACCACTACCAGTTGCAAACATGAATACCATCTGCATTGTATTCTTGAATGGTCACAGAGAAGCAAAGAATGCCCAATATGTTGGCAGTTACTTATCTTGGAAGACCCTGGCAGCCAAGAGCTTCTAAATGCAGTGGAGGCTGAAAAACGCCTAAGATCAAGAACTGTGTGTTCACATGCATCCACCACTAATTCTGGTAGCCCATATGAACGGCTTAGCGATGCACAAGATGATTCTTGTTCAGATGACTCTGACTTTGATGAGCAACTTATGCAGCAAGTAGTGGCTGCTACAGATAGAGCTCCATATATCTGCAGACGGGGAAGGCAGAGATCTCTTGGAGTAGGTCCTTCAGAGGTTCTTGTTTTCAACTCTTCTTTGCATGCATCTGGGATGCGACCAAGACTTACAACTTCATCATCTGGGGATAGTTCACCAAATTCTGGTGCACCCAGAGTTATCTATGGCCAGCCATCACCTGAGAGTGTGAGGGGACTAGACACTCGTGAAATGTTCTCCTTACCCGAGTCCATCAAATCCAAACTTTCTGCTGCTTCAGCCAGATGCAAGGAATCAATTTCAAAAAATACTCGTGGTCTTAAAGAGAAGTTAATTGCTCGTAATGCCTCAGTAAAAGAGCTGAGTAAAGGTGTTCAGCGTGAGATGAATGCGGGCATTGCTGGTGTTGCACGGATGATTGAACGCCTTGATCTTGCTACAAAACTCTCCTCGACTCCTCTCAGAACTTCAGGTTTCCATGTAAAAGGGAAGTCTATCCAAGAGAGTGGAGAGAGTGGAGTTTTGGTTGGCGATTTTAGTTCAAATGCTCCCTCACTCGATTCTACCTTGGTTGCTGTTGGAGTGGAAATTCCTGCTTCATGTGTTCAGACTGAACATGATGCTGCGAGGACTTAA 1056 0.4574 MANFTSSFLSPPSMSYIATSLPSAAFDDTSDDACSICLEPFSTVDPATTTSCKHEYHLHCILEWSQRSKECPICWQLLILEDPGSQELLNAVEAEKRLRSRTVCSHASTTNSGSPYERLSDAQDDSCSDDSDFDEQLMQQVVAATDRAPYICRRGRQRSLGVGPSEVLVFNSSLHASGMRPRLTTSSSGDSSPNSGAPRVIYGQPSPESVRGLDTREMFSLPESIKSKLSAASARCKESISKNTRGLKEKLIARNASVKELSKGVQREMNAGIAGVARMIERLDLATKLSSTPLRTSGFHVKGKSIQESGESGVLVGDFSSNAPSLDSTLVAVGVEIPASCVQTEHDAART* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2131 351 MobiDBLite consensus disorder prediction 178 211 - -
Apr9g2131 351 ProSiteProfiles Zinc finger RING-type profile. 34 74 IPR001841 -
Apr9g2131 351 MobiDBLite consensus disorder prediction 103 121 - -
Apr9g2131 351 MobiDBLite consensus disorder prediction 178 199 - -
Apr9g2131 351 Pfam Ring finger domain 33 74 IPR001841 -
Apr9g2131 351 SUPERFAMILY RING/U-box 27 80 - -
Apr9g2131 351 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 299 - -
Apr9g2131 351 SMART ring_2 34 74 IPR001841 -
Apr9g2131 351 MobiDBLite consensus disorder prediction 103 131 - -
Apr9g2131 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 78 IPR013083 -
Apr9g2131 351 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF1A 1 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2131 Apr-Chr9 29466547 29469290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2131 28 82 C3H Transcription Factor Family AT4G00335 45.455 2.70e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2131 K19043 - gmx:100785684 459.144