Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2130 ATGAACACCAAAACACTCTCAGTGTCTCCTCTTCCTACTTTGGGTATTCATTCATCAGAAAAGCCAACTCTTACTCGCTATAACCCTCGCTCACGTAACCATTCTCTCAAACTCTTATCCTCCACCAACCTCAACTTCACTCCCATAACTCCCACTTTGAGAGAAATATGCCAAGATCATGTTCCTCACCATGTTTTGCAAAGAATGCAAGAGATTGGATATGTCATGCCCACAGATGTTCAGAAGCAAGCGTTGCCTTATCTTTTCTCCGGGCGTGATTGCATCCTTCATGCTCAGACAGGTTCTGGGAAAACGCTTACATACCTGCTTTTGATCCATTCCATTGTCAATGCTGGAAAATCTTCTGTACAAGCTCTAGTTTTGGTGCCCACACGTGAACTTGGCATGCAAGTCACTAAGGTTGCTAGGACATTGGCTGCAAAACCAGATGGAGTTGATGGGGAGCAGAAGTTATGTACCATCATGGCTCTGTTAGATGGAGGAACATTGAGAAGACACAAGAGTTGGTTGAAGGCGGAGCCTCCAACAGTAGTGGTTGCAACAGTTGGGAGTTTATGCCAAATGCTTGAAAGACATACTTTTTCGCTTGAAACTGTGCGGGTGCTGATTGTTGATGAGGTTGACTGCATTTTCAATTCCTCAAAGCAAACAGTTTTTGCCAGTGCATCTATACCACAGCACAAACGATTTCTTCACGACTCTGTGCAGCAGAAGTGGACAAAGAGAGATGTGGTTCATATTCATGTGAGTGCAGTGGAGCCCATGCCATGTCGCCTATATCATAGATTTATAATGTGTGATACAAAAAGAAAACTACAAACCGTGTTATCCTTGATACAATCTGATGCACCTGAGTCTGGCATTATATTTGTTGGTGAGCAGTCTGAGAAGTCAAAAAAGGCTGGCAATGCTCCATCAACCTCCCTTCTGATTGACTTTTTGAAGACATCATATCAAGGTTCTTTAGATATTCTCCTTCTCGAAGACAAAATGAATTTCAATTCACGAGCAGCTTCACTATTGGAGGTTAGAAAAGGCGGTGGCTATCTACTTGTAGCAACAGATATAGCTGCTAGAGGAGTTGACCTTCCAGAAATGTCTCACATTTACAACTTTGATTTGCCAAGGACTTCCATCGATTATCTTCATCGAGCAGGGAGAACTTGTAGGAAACCCTTTTCAGACAACAATTGTACTGTTACTAGCATTATTGTTCCAGATGAGCGATTTGTTCTGCAGAGATATGAAAATGAGTTGATGTTTAACTGTGAAGAGCTTATTCCATAA 1308 0.422 MNTKTLSVSPLPTLGIHSSEKPTLTRYNPRSRNHSLKLLSSTNLNFTPITPTLREICQDHVPHHVLQRMQEIGYVMPTDVQKQALPYLFSGRDCILHAQTGSGKTLTYLLLIHSIVNAGKSSVQALVLVPTRELGMQVTKVARTLAAKPDGVDGEQKLCTIMALLDGGTLRRHKSWLKAEPPTVVVATVGSLCQMLERHTFSLETVRVLIVDEVDCIFNSSKQTVFASASIPQHKRFLHDSVQQKWTKRDVVHIHVSAVEPMPCRLYHRFIMCDTKRKLQTVLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTSLLIDFLKTSYQGSLDILLLEDKMNFNSRAASLLEVRKGGGYLLVATDIAARGVDLPEMSHIYNFDLPRTSIDYLHRAGRTCRKPFSDNNCTVTSIIVPDERFVLQRYENELMFNCEELIP* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2130 435 Pfam Helicase conserved C-terminal domain 278 397 IPR001650 -
Apr9g2130 435 Gene3D - 30 251 IPR027417 -
Apr9g2130 435 CDD SF2_C_DEAD 268 411 - -
Apr9g2130 435 SMART ultradead3 73 270 IPR014001 -
Apr9g2130 435 SMART helicmild6 315 399 IPR001650 -
Apr9g2130 435 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 28 434 - -
Apr9g2130 435 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 413 IPR027417 -
Apr9g2130 435 Gene3D - 264 434 IPR027417 -
Apr9g2130 435 CDD DEADc 65 240 - -
Apr9g2130 435 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 85 249 IPR014001 -
Apr9g2130 435 Pfam DEAD/DEAH box helicase 78 226 IPR011545 GO:0003676|GO:0005524
Apr9g2130 435 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 58, CHLOROPLASTIC 28 434 - -
Apr9g2130 435 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 278 435 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2130 Apr-Chr9 29459946 29465136 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2130 25 424 Eukaryotic Initiation Factors Gene Family AT1G72730 25.874 4.51e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2130 - - gmx:100786205 727.628