Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2120 ATGATGCAACCTGGACCTGGCATGGCTCCACCAAGCATGGCTCAACAACCCAACCAGCAATACCCACAACAGCAGCAGCAGCAACAACAACCACCCTACATGATGATGCCGCCGCAGCCGCAGCCCCCTCCCATGTGGGCCCCATTGGCTCAACCTCCGCCTCAATCGGTGGCTCCTCAGCAACCCACCAGCGCCGATGAGGTCCGCACCCTCTGGATCGGCGATTTGCAGTACTGGATGGACGAAAATTATCTCTACACCTGTTTCGCCCACACCGGCGAGGTGGCCTCTGTGAAAGTCATTCGGAATAAGCAAACCAGTCAATCCGAAGGTTATGGTTTTATTGAGTTTACTAGTCGTGCTGGGGCTGAGAGAATACTTCAGACATATAATGGCACCATTATGCCAAATGGCGGGCAGAACTTCAGATTGAACTGGGCAACATTTAGTGCGGGCGAGAGGCGTCACGATGACAGCCCAGATTACACAATATTTGTTGGAGACCTGGCGGCTGATGTTACAGATTATCATCTGCAAGAGACATTTCGAGCTCGGTTTCCCTCTGTTAAGGGGGCCAAAGTTGTGATTGATAGGCTCACCGGCCGGACAAAAGGTTATGGATTTGTTAGGTTTGGAGATGAGAGTGAACAAGTAAGAGCTATGACCGAAATGCAAGGGGTTCTCTGTTCAACGAGGCCCATGCGTATTGGACCTGCCTCTAATAAAAACCCTAGCACTCAGTCAAAAGCATCGTATCAGAATCCTCAAGGGGCACAAAACGAGAATGATCCAAATAATACCACTATTTTTGTTGGCAATTTGGATCCTAATGTCACAGATGACCATTTGAGACAAGTTTTTGGGCAGTATGGAGAATTAGTTCATGTGAAGATTCCAGCTGGCAAGAGATGTGGATTTGTCCAATTTGCCGATAGGAGCTGTGCAGAAGAGGCACTGCGGGTTTTAAATGGCACACTTTTAGGTGGACAAAATGTTCGGCTTTCATGGGGCCGAAGTCCATCAAACAAACAGGCTCAACCAGATCCAAACCAGTGGAATGGTAGTGGATATTATGGATATGCTCAGGGTTATGAAAATTATGGTTATGCTCCTACTGGACAGGACCCCAATATGTATGGCAGTTATCCTGGCTATGCCAATTACCAACCTCCACAGCAACAGCAGCAAATAGGATATAGCTAA 1203 0.4821 MMQPGPGMAPPSMAQQPNQQYPQQQQQQQQPPYMMMPPQPQPPPMWAPLAQPPPQSVAPQQPTSADEVRTLWIGDLQYWMDENYLYTCFAHTGEVASVKVIRNKQTSQSEGYGFIEFTSRAGAERILQTYNGTIMPNGGQNFRLNWATFSAGERRHDDSPDYTIFVGDLAADVTDYHLQETFRARFPSVKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTEMQGVLCSTRPMRIGPASNKNPSTQSKASYQNPQGAQNENDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQAQPDPNQWNGSGYYGYAQGYENYGYAPTGQDPNMYGSYPGYANYQPPQQQQQIGYS* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2120 400 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 24 397 - -
Apr9g2120 400 Gene3D - 9 152 IPR012677 -
Apr9g2120 400 MobiDBLite consensus disorder prediction 232 267 - -
Apr9g2120 400 SMART rrm1_1 268 335 IPR000504 GO:0003723
Apr9g2120 400 SMART rrm1_1 163 237 IPR000504 GO:0003723
Apr9g2120 400 SMART rrm1_1 70 145 IPR000504 GO:0003723
Apr9g2120 400 CDD RRM1_SECp43_like 70 150 - -
Apr9g2120 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 269 332 IPR000504 GO:0003723
Apr9g2120 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 164 227 IPR000504 GO:0003723
Apr9g2120 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 136 IPR000504 GO:0003723
Apr9g2120 400 MobiDBLite consensus disorder prediction 386 400 - -
Apr9g2120 400 SUPERFAMILY RNA-binding domain, RBD 29 150 IPR035979 GO:0003676
Apr9g2120 400 MobiDBLite consensus disorder prediction 380 400 - -
Apr9g2120 400 CDD RRM2_SECp43_like 161 240 - -
Apr9g2120 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 162 241 IPR000504 GO:0003723
Apr9g2120 400 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 24 397 - -
Apr9g2120 400 SUPERFAMILY RNA-binding domain, RBD 156 254 IPR035979 GO:0003676
Apr9g2120 400 Gene3D - 249 348 IPR012677 -
Apr9g2120 400 CDD RRM3_NGR1_NAM8_like 266 337 - -
Apr9g2120 400 MobiDBLite consensus disorder prediction 1 63 - -
Apr9g2120 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 267 339 IPR000504 GO:0003723
Apr9g2120 400 MobiDBLite consensus disorder prediction 33 59 - -
Apr9g2120 400 MobiDBLite consensus disorder prediction 236 267 - -
Apr9g2120 400 Gene3D - 153 248 IPR012677 -
Apr9g2120 400 SUPERFAMILY RNA-binding domain, RBD 253 363 IPR035979 GO:0003676
Apr9g2120 400 MobiDBLite consensus disorder prediction 12 32 - -
Apr9g2120 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 149 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2120 Apr-Chr9 29383720 29387766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2120 243 345 Eukaryotic Initiation Factors Gene Family AT4G34110 32.727 3.71e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2120 - - gmx:100796848 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2120 9 29383720 29387766 Apr1g1766 1 27330443 27334093 PCT