Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2087 ATGGCCACATCAACCCCTTTCCTCTTGCTTTCATGTTTCATACTACACCTTGCTTCATGCTTGGTTATTGTCCATTCAACAAAGAAGTACAACAACACTCTTCAATCCGTCTCAACAACTAAGTATATCCCTAAGAGTCCTAAGAAACCATTCCTCAATGAGATAGACTCTTGCTGGCGGGCCAAACCAAATTGGGCTTCAAATCGTCGAGCCTTGGCTGATTGTGCAATTGGCTTTGGAAAAGATGCCATAGGAGGCAAATATGGTGCAATATATCTTGTCAAAGATCCCTCTGATGACCCTACAAACCCGAAGCCAGGCACACTTCGTTATGGTGTAATCCAAACAGAGCCCTTATGGATCATTTTTGACAAAGACATGGTTATTACACTCGAGAATGAGCTTATAATGAATAGCTACAAGACCATTGATGGGAGAGGAGCTAAAGTGGAGATTATGGGTGGGCCTTGCATTACAATACAAGGGGTTAGCCATGTTATTATACATGGGATTAGCCTCCATGATTGTGAACCGGGTAAGGCTGGTCTTGTGAGAAGTACTGCTGAACATGTTGGCCATCGTCAAGGCTCTGATGGAGATGCCATTAGTATATTTTCTTCCTCAAATATTTGGATTGATCATTGCTATTTGGCTCGTTCCACCGATGGCCTAATTGATATTATTCATGCCTCAACTGCCATTACCATTTCCAATAATTACTTTACCCAGCATGACAAAGTTATGTTGCTAGGACATAATGACCAATACACAGCAGATAAAATAATGAGAGTAACAATAGCCTTCAACCGGTTTGCTAGTGGCCTAACTGAAAGGATGCCAAGGGTAAGATTTGGTTATGCTCATGTTGTCAACAACAGATATGATGAATGGAAAATGTATGCTGTGGGCGGCAGTGCTAACCCAACCATTTTAAGTGAAGGAAATTTGTATATAGCACCGGATGACCAAAATGCTAAACAGGTTACCAAGAGGGAAAAGAAGGAAAACTGGCATAGTTGGAAATGGAGGTCCTCTAAGGATTTATTCCTAAATGGTGCTTATTTTGTGCCATCTGGGTATGGAAGTTGTGCTCCAAACTATTCACCTGCTCAATCTTTTACTGCTGCTCCAGCATACATGGTGCCTGCAATAACTCTCAATGAAGGTCCCACCAGTTGTATTGTTGGGATAGCATGTTAG 1200 0.4183 MATSTPFLLLSCFILHLASCLVIVHSTKKYNNTLQSVSTTKYIPKSPKKPFLNEIDSCWRAKPNWASNRRALADCAIGFGKDAIGGKYGAIYLVKDPSDDPTNPKPGTLRYGVIQTEPLWIIFDKDMVITLENELIMNSYKTIDGRGAKVEIMGGPCITIQGVSHVIIHGISLHDCEPGKAGLVRSTAEHVGHRQGSDGDAISIFSSSNIWIDHCYLARSTDGLIDIIHASTAITISNNYFTQHDKVMLLGHNDQYTADKIMRVTIAFNRFASGLTERMPRVRFGYAHVVNNRYDEWKMYAVGGSANPTILSEGNLYIAPDDQNAKQVTKREKKENWHSWKWRSSKDLFLNGAYFVPSGYGSCAPNYSPAQSFTAAPAYMVPAITLNEGPTSCIVGIAC* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2087 399 Gene3D - 52 391 IPR012334 -
Apr9g2087 399 PANTHER PECTATE LYASE 1 398 - -
Apr9g2087 399 SUPERFAMILY Pectin lyase-like 53 389 IPR011050 -
Apr9g2087 399 SMART amb_all 126 323 IPR002022 -
Apr9g2087 399 PRINTS Pollen allergen Amb family signature 75 92 IPR018082 -
Apr9g2087 399 PRINTS Pollen allergen Amb family signature 98 123 IPR018082 -
Apr9g2087 399 PRINTS Pollen allergen Amb family signature 134 150 IPR018082 -
Apr9g2087 399 PRINTS Pollen allergen Amb family signature 198 219 IPR018082 -
Apr9g2087 399 PRINTS Pollen allergen Amb family signature 278 297 IPR018082 -
Apr9g2087 399 PRINTS Pollen allergen Amb family signature 300 319 IPR018082 -
Apr9g2087 399 PRINTS Pollen allergen Amb family signature 340 364 IPR018082 -
Apr9g2087 399 PRINTS Pollen allergen Amb family signature 370 393 IPR018082 -
Apr9g2087 399 Pfam Pectate lyase 137 317 IPR002022 -
Apr9g2087 399 PANTHER PECTATE LYASE 18-RELATED 1 398 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2087 Apr-Chr9 29063839 29065933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2087 7 393 Polysaccharide Lyase AT4G22080 64.010 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2087 K01728 - gmx:100807483 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2087 9 29063839 29065933 Apr1g1792 1 27652027 27654454 PCT