Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2083 ATGGAGATTGTAGTTCCAAGACAAGATCGGTCAAATCAACACACGGAGGATAAGCTGGAGTTCTCAAGATTGTCAAAAAATTATGGAAATTCAAATAGAAAGGCTGAAGGAATCCACGAGAATGGTAATGAGAAGCCAGAATTAGAAGAGGAAGAAGAAACTATGGAATATTTAAGGAAGAGAGCCGCAGTAAGAAGTGCAGTTGCACAACGAGAACGATTAAATCAGCATACTGACAATAGGTCAGACAAAATCTCAAAATGCCGAAAAGATTTTAGAAATTCAAAGATAAAGGTTCAAGAAATTCATAAACATGATGACATAAAACCAGAGTCAGAAGGGAAAGAAGACATTCTTGTACGTCCAAAGAGGGCTTCCAAGTTCCCATCCAAGAAAGGAGATGGGCCAACCAAGCTTACTGCTTCAAACAAGAAAAGAAAATTTGGAGATGATCTCTTGATTGACAATTTGGAAGATAAAGAAATGCTCTTTCTTTTAAAGTCAAAGTCCAGGAGCAGAGCTAGAAGAATGGATAGTGTGATGGATGTTGGACAAAATCGGTGGAAATGTCATCAATGCATGAAAAAGGAGAGAGCAGCTTTTGTGCCTTGTACCAAATGTCAGAAAATGTACTGCATGCGATGTTTCAATCAATGGTATCCTGATATGTCAGTAGAAGAATTTGCTGAAAGTTGTCCATTTTGCCGTAAAAAATGCAATTGCAATGTCTGCTTACGTTCAAGAGGAGTGATTAAGACATCTAACAGGGACATCACCAATTATGAAAAAGCTGAGTATCTGCAACATATGATTAATTTACTCATTCCATTTCTTAAACAAATTTGTGATGAACAAAGTCTAGAGGAAGAGATTGAAGCTAAAATACAAGGGAAATCTTCTTGTGAGATTGAAATACCTCAAAGTCTTTGTGGTGACAATGAGCGTGTCTATTGTGACCATTGTGCTACTTCAATTATTGACCTTCATAGAAGCTGCCCGAAGTGTTCCTATGAGCTCTGCCTTAGTTGTTGCCAAGAAATACGCAATGGAAGCATTACACCCCGGGCTGAGCTGAAGTTTCAATATGTAAATAGGGGCCTTGATTATATGCATGGTGGTGACCCTCTACCAGTCCCTTGTGAGTTAGAGACATCAGATGGTCATATTGAGTCATCTATGTTGTGGAATGCGAAGAGTGATGGAAGCATTGGTTGCGCGCCAAAGGAGGTAGGGGGTTGTGGTAGTTCTCTATTGGAGTTGAGGCGCATCCTCCCAAATGGGTGGATATCTGATTTGGAAGCCAAAGCTCGCAGTATGCTCAAAATTTGGGAAAACAAAAACATTTACTGTCCAGAGTCAACTGAGATTTCAAATGGAGGGATGTTACTTTTCCAAAAGCATTGGGCTTATGGTGAACCAGTTATAGTTCGTGATGTTCTTAAACAGGGGACAGGTCTGAGCTGGGAGCCAATGGTAATGTGGCGAGCATTATGTGAAAATATGGTTTCAGAAATCAGTTCAAAAATGTCAGAAGTGAAAGCCATTGATTGCCTAGCTAATTGTGAGGTAGAAATTAATACTCACAAGTTCTTCAAAGGTTATATTGAGGGAAGAACATATAGAAATCTCTGGCCAGAGATGCTCAAACTAAAAGACTGGCCCCCCTCCGATAAATTTGAAGATCTTTTGCCCCGTCATTGTGATGAGTTTATTTGTTCCTTGCCATTTCAAGAGTACAGTGATCCTCGGGCCGGAATTCTCAATCTTGCTGTGAAGTTACCAGCCCATGTCCTGAAACCTGACATGGGTCCAAAAACATATATTGCTTATGGGATCAAAGAAGAACTTGGTAGAGGAGACTCTGTAACAAAGCTTCACTGTGACATGTCAGATGCGGTGAATATTTTGACCCATACAGCTGAGGTAATATTAACTGATGAGCAGCACACTATTATTTCAAAGTTGAAAGAAGCACACAAGGCACAAGATGAGAGAGAACTTTCTGCTCAAGAGAGTGTTGCTGTTGGCCTGAATGGTCAACCTTGCAAAGACAACAAAGGATGCATAGGAAATAAGGATGTTTCAGAACCCAGTGATATGGAAAAGCGCCCAATTGAAATAAATGGAAATATTTTTCCAAATGGTGTGTCTGAGGGGGTCCCTTCTTCTGTTACAGAAAATGAATCAACGGAATCAGGTGGTGCCCTATGGGATATATTTCGGAGAGAGGATACTGAAAAGTTAGAAACATATCTAAGAAAACACTCGGAAGAATTTAGACATACATATTGTTCTCCAGTTGAACAGGTTGTACATCCAATTCATGACCAATGTTTTTATCTGACTTTGGAGCACAAAAAAAGGCTGAAGGATGAGTTTGGTGTTGAACCATGGACTTTTGAACAGAGACTTGGGGAGGCAGTATTTATTCCTGCCGGATGCCCACATCAAGTCAGGAATCTCAAGTCATGCACAAAAGTTGCTGTAGATTTTGTGTCCCCAGAAAATGTCCATGAGTGTCTGCGTTTAACTAATGAGTTCCGCCAGCTTCCCAAGAACCACAAGGCTAGAGAAGATAAACTTGAGATAAAGAAGATGATAATTTATGCAGTTGATCAAGCAGTCAAAGACTTAAAAGCTTTACTTAAGTGTTTGTGA 2658 0.3995 MEIVVPRQDRSNQHTEDKLEFSRLSKNYGNSNRKAEGIHENGNEKPELEEEEETMEYLRKRAAVRSAVAQRERLNQHTDNRSDKISKCRKDFRNSKIKVQEIHKHDDIKPESEGKEDILVRPKRASKFPSKKGDGPTKLTASNKKRKFGDDLLIDNLEDKEMLFLLKSKSRSRARRMDSVMDVGQNRWKCHQCMKKERAAFVPCTKCQKMYCMRCFNQWYPDMSVEEFAESCPFCRKKCNCNVCLRSRGVIKTSNRDITNYEKAEYLQHMINLLIPFLKQICDEQSLEEEIEAKIQGKSSCEIEIPQSLCGDNERVYCDHCATSIIDLHRSCPKCSYELCLSCCQEIRNGSITPRAELKFQYVNRGLDYMHGGDPLPVPCELETSDGHIESSMLWNAKSDGSIGCAPKEVGGCGSSLLELRRILPNGWISDLEAKARSMLKIWENKNIYCPESTEISNGGMLLFQKHWAYGEPVIVRDVLKQGTGLSWEPMVMWRALCENMVSEISSKMSEVKAIDCLANCEVEINTHKFFKGYIEGRTYRNLWPEMLKLKDWPPSDKFEDLLPRHCDEFICSLPFQEYSDPRAGILNLAVKLPAHVLKPDMGPKTYIAYGIKEELGRGDSVTKLHCDMSDAVNILTHTAEVILTDEQHTIISKLKEAHKAQDERELSAQESVAVGLNGQPCKDNKGCIGNKDVSEPSDMEKRPIEINGNIFPNGVSEGVPSSVTENESTESGGALWDIFRREDTEKLETYLRKHSEEFRHTYCSPVEQVVHPIHDQCFYLTLEHKKRLKDEFGVEPWTFEQRLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVHECLRLTNEFRQLPKNHKAREDKLEIKKMIIYAVDQAVKDLKALLKCL* 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2083 885 Pfam JmjC domain, hydroxylase 728 831 IPR003347 -
Apr9g2083 885 ProSiteProfiles JmjC domain profile. 582 848 IPR003347 -
Apr9g2083 885 SUPERFAMILY Clavaminate synthase-like 459 885 - -
Apr9g2083 885 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 445 884 IPR045109 GO:0032454|GO:0033169
Apr9g2083 885 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 17 446 IPR045109 GO:0032454|GO:0033169
Apr9g2083 885 ProSiteProfiles Zinc finger RING-type profile. 190 236 IPR001841 -
Apr9g2083 885 SMART cupin_9 563 848 IPR003347 -
Apr9g2083 885 MobiDBLite consensus disorder prediction 1 54 - -
Apr9g2083 885 MobiDBLite consensus disorder prediction 7 23 - -
Apr9g2083 885 CDD cupin_RmlC-like 772 832 - -
Apr9g2083 885 Gene3D Cupin 443 857 - -
Apr9g2083 885 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 188 255 IPR018866 -
Apr9g2083 885 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ25-LIKE 445 884 - -
Apr9g2083 885 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ25-LIKE 17 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2083 Apr-Chr9 29046933 29052663 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Apr9g2083 JmjC 8.6e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2083 K15601 K21989 gmx:100797860 1340.87