Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2079 ATGGAGGGTAATTCTAGTGTTATGGGTTTTGGAGAGAATACAACTAGTAGTGGGGTTTGTCCAATGATGATGATGCCTTTAGTGACTTCTCATCATGTTGGTCATCATCCAATAAATCCTAATCTTAATAATCCCAATCCTAATCCTAGTGAAGACACAAACATTTCATTCCTTCCCTCGCCTTGCAATAATAATCATCAACACATAAACCGCAACATCATGCTTGACAGTAACCACAACGCCAACACCTCTGGGTTAGGGTATTTCATGGACATCCACAACACCAACAACGATGGAAGCTCCTCCTCCTCTTCTTCCGCTGTCAAGGCCAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGGCAGCCTACGTCAATTGTCAAAAGGTTGGAGCTCCTCCTGAAGTGGTGGCTAGGTTAGAAGAAGCGTGTGCATCTGCTGCTGTGACAATGGCAGGTGGTACAGCCTGCATCGGTGAGGATCCAGCGCTGGATCAGTTCATGGAGGCTTACTGCGAGATGCTGATCAAGTACGAGCAAGAGCTCTCCAAACCCTTTAAGGAAGCCATGCTCTTCCTTCAAAGGATCGAGGGCCAGTTCAAATCTCTTACTATTTCTTCATCATCAGACACTGCTTGTAATGAAGCTACTGATAGGAATGGATCATCTGAAGATGTTGATGTACACAACAACTTAATCGATCCCCAGGCAGAGGATCAAGAACTGAAGGGTCAACTCTTACGCAGGTACAGTGGATACCTTGGCAGTTTGAAGCAGGAATTCATGAAAAAGAGGAAAAAAGGCAAGCTGCCTAAAGAAGCAAGGCAACAATTACTTGAATGGTGGAGCAGACATTACAAATGGCCTTATCCATCTGAATCGCAGAAGCTGGCTCTCGCAGAATCAACAGGTCTGGATCAGAAGCAAATTAACAACTGGTTTATTAATCAGAGAAAACGGCACTGGAAGCCTTCAGAGGACATGCAATTTGTGGTGGTGGATCCAAGCCATCCACACTACTACATGGAAAATGTTCTGGGCAATCCCTTTCCCATGGATCTCTCCCACACCATGCTCTGA 1083 0.4543 MEGNSSVMGFGENTTSSGVCPMMMMPLVTSHHVGHHPINPNLNNPNPNPSEDTNISFLPSPCNNNHQHINRNIMLDSNHNANTSGLGYFMDIHNTNNDGSSSSSSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAAVTMAGGTACIGEDPALDQFMEAYCEMLIKYEQELSKPFKEAMLFLQRIEGQFKSLTISSSSDTACNEATDRNGSSEDVDVHNNLIDPQAEDQELKGQLLRRYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHPHYYMENVLGNPFPMDLSHTML* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2079 360 MobiDBLite consensus disorder prediction 36 62 - -
Apr9g2079 360 Pfam KNOX2 domain 158 205 IPR005541 GO:0003677|GO:0005634
Apr9g2079 360 Gene3D - 267 329 - -
Apr9g2079 360 ProSitePatterns 'Homeobox' domain signature. 300 323 IPR017970 GO:0000981|GO:0006355
Apr9g2079 360 Pfam ELK domain 242 263 IPR005539 GO:0003677
Apr9g2079 360 ProSiteProfiles 'Homeobox' domain profile. 262 325 IPR001356 GO:0003677
Apr9g2079 360 SUPERFAMILY Homeodomain-like 264 340 IPR009057 -
Apr9g2079 360 Pfam KNOX1 domain 107 146 IPR005540 GO:0003677|GO:0005634
Apr9g2079 360 SMART KNOX2_2 155 206 IPR005541 GO:0003677|GO:0005634
Apr9g2079 360 ProSiteProfiles ELK domain profile. 242 262 IPR005539 GO:0003677
Apr9g2079 360 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 4 349 - -
Apr9g2079 360 SMART ELK_2 242 263 IPR005539 GO:0003677
Apr9g2079 360 SMART HOX_1 264 329 IPR001356 GO:0003677
Apr9g2079 360 Pfam Homeobox KN domain 282 321 IPR008422 GO:0003677|GO:0006355
Apr9g2079 360 SMART KNOX1_2 106 150 IPR005540 GO:0003677|GO:0005634
Apr9g2079 360 PANTHER - 4 349 - -
Apr9g2079 360 MobiDBLite consensus disorder prediction 35 62 - -
Apr9g2079 360 CDD homeodomain 274 326 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2079 Apr-Chr9 29017233 29022141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2079 108 360 Homeobox Transcription Factor Family AT1G62360 80.916 2.06e-134 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Apr9g2079 KNOX2 7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2079 - - gmx:100127401 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2079 9 29017233 29022141 Apr9g2079 9 29017233 29022141 ECH
Apr9g2079 9 29017233 29022141 Apr1g1805 1 27742047 27747594 PCT