Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2075 ATGAGTCAACTCGGTCTCATACTGCAGGAATCGCTGCGTAACGAAAGAGAAGCCAGAACCATTCTCGGTTTGTTAACGGAGCAAATGGACGCCGTCGACAGAGGCCCACGGAGGAGGCGAACTCTCAAAGAACGCCTCAGATTTACCGGAATCGGTTGTTGTGGGGCCACATGGGTTTTCCGTCCGGCAACCCTAACCGTCAGGGACGAAGGAGGAACGCAGCAAAACCAACACCAGCAAACCATCGCGGCTCAAGATCCGAACCCGGTTGAACCAGAGTGTGTGGGTCCGACTCCGTCGAGTTCGGGTATGAATCTAGCGGCGGCGCTGGCGGCGGAGCGACAGTTCCGGGAAGCGGAAGCGGGCGGAGAGGGGGAGGCAAGAAGGGTGGCGGAGACGCCGTGGAGGGTGTCGTTGATGCGGTTGTTGGAGGAAACGGAGGGTGGGGATGCGGAGGTGGAAGCGGAAAAAGGGACGGCGGGTAATGATTCGGTGTGCTGCGTGTGCATGGGGAGGAAGAAAGGCGCGGCTTTCATTCCATGTGGGCACACATTCTGTAGGGTGTGTTCAAGGGAGCTGTGGCTGAACCGAGGGACTTGTCCCCTTTGCAACCGTTCCATTCTCGAGATTCTCGACATCTTCTGA 645 0.5798 MSQLGLILQESLRNEREARTILGLLTEQMDAVDRGPRRRRTLKERLRFTGIGCCGATWVFRPATLTVRDEGGTQQNQHQQTIAAQDPNPVEPECVGPTPSSSGMNLAAALAAERQFREAEAGGEGEARRVAETPWRVSLMRLLEETEGGDAEVEAEKGTAGNDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGTCPLCNRSILEILDIF* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2075 214 MobiDBLite consensus disorder prediction 70 86 - -
Apr9g2075 214 CDD RING-HC 166 203 - -
Apr9g2075 214 ProSiteProfiles Zinc finger RING-type profile. 166 204 IPR001841 -
Apr9g2075 214 SUPERFAMILY RING/U-box 159 211 - -
Apr9g2075 214 MobiDBLite consensus disorder prediction 70 101 - -
Apr9g2075 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 214 IPR013083 -
Apr9g2075 214 PANTHER OS01G0917900 PROTEIN 17 214 - -
Apr9g2075 214 Pfam Zinc finger, C3HC4 type (RING finger) 163 208 - -
Apr9g2075 214 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 17 214 - -
Apr9g2075 214 SMART ring_2 166 203 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2075 Apr-Chr9 28970820 28972239 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2075 21 214 C3H Transcription Factor Family AT4G22250 54.680 9.78e-59 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2075 - - gmx:106799504 287.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2075 9 28970820 28972239 Apr9g2075 9 28970820 28972239 ECH
Apr9g2075 9 28970820 28972239 Apr1g1814 1 27854160 27854747 PCT