Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2058 ATGTCTGTCATCGAAACCCCCGCCGTTCACCACCGCAGCGGGGGCGCCTCCGATCACCACCGTCACCCCTCCAAACGCAAATTCGACGATGGCGAGGACGAAGAATTGTCAGACTTAGTGAGCGTGAGGATGAAGAAGGAAGAGGCGGTGAATTCGTGGTCGGAGTTGCGATCGCACCTGCAGTTCTTTGTGCGAATGATGTCCGGCGGAAACACAATCGTGATGCAAGCTTATCCCGACGACAGCGTGAAATCGATTCACGAGCGAATCCAAAGCATGAAGGGAATCCCTGTGTTCGAACAGAGGTTAATCTACAGAGGCAAACAGCTTCAGTGGGAACAGACTCTTGCTGAGTGTTCCATCCAAAACGACGCTAACCTTCAACTCGTTGGTCGCATGCGTAGCACGGAGCATCCACAGGCCTGGCAGGTTATAAACGACATGGTCTCTCTCGTTTACCGTCTCTGCCGCGGAGAAACCGTTCGTGATGCCTTGAAGACTATCAAGGGATTGATCGCCAGTTACTTGAACATGACCCCAAGAATTGACAGCGATTCTGCGTCTGGGTATTTTCAGATTTTCATGTCTTCTAATGCTCCTGAGGTGCTGGTTATGCTCTATATGTCTCCCTTTGCAGGTAACAAGGACTGTGCTGATTCTTCTGTTAGACATTTTTTGAGTTCTTGTTGTAATACCTTGTGTAAGGCGTTGCACGGCCAGTGTGCGCGTGTGGTGTTGGAGTTTTGTAAATTGCTTAGGAGAGTGGGGTATCAGGACCCTTTGTATCTCTATTGTCGGAGTACTTTTGGGTCATTGTTGGAAACAGCTGGGGTTTCCTATGCTGGCTCTGATAATGGCAAAGGGATGATTTTGATTCAAGACATTTTCCCCTTTGTTCGTGAGCTTGCTAGAAGCTTGTTGAGGGACTTGGATTTGAGTATGGAATCCCCCTCTGCTGCCGGGCTTTTGTTGAACGATGTTGGTGATTTTACTGCCTTCTTAATACCTTTGAGAACTGGAATCATGGAGCTCCAGGCTATCAAGGATTCTATGCCTCAAGACAAACGTCATAAGGACCTCTTGCTTGCCGAAGAGATTGGACACCTTCATCGTTTGTACATTGATTTGTTGAACAAAATTGAACAGTGCCTTCAAAAGATGGAGCAAAGTTTGGCAGGTCAGGAGATTGCGGAAGGGGACAATGTTTGTCCTGCGTGGTCTCATTATCTTACCATCTTGAAGGAGTTGAATAAAATTTCTAAGCTTTATGATGGTGCTGAGGAAAAGCTTTGGAGTGTTTTGACACGCCAAAGAAGTGTGCTGTGTCAACTAATTGTTCGGTATGCGAAGAGAACTGATGAGCATCAGTGGATTCTTGAGCACAGGTGTGTGACCAATTTTGAGTCTCGAAGGCATTTGGCCATGATGATGTTCCCGGAGGTAAAAGAAGACTATGAGGAGTTGCATGAGATGCTTATTGACAGATCTCAGTTATTGGCTGAATCTTTTGAATACATAGCTCGTGCTGAACCTGAATCTCTACATGCTGGCCTGTTTATGGAATTCAAAAATGAGGAAGCTACTGGCCCAGGTGTTCTTAGGGAGTGGTTTCTCCTGGTATGTCAAGCAATATTCAATCCACAAAATGCTCTTTTTGTGGCCTGCCCAAATGATCGGAGGAGGTTTTTCCCCAATCCTGCTTCTAAGGTACATCCTCTGCACCTTGAGTACTTCAGCTTTGCTGGTCGAATTATTGCATTAGCTTTGATGCATAGGGTGCAAGTCGGTATTGTTTTTGATCGTGTGTTTTTCTTGCAATTGGCTGGAAACTATATTACTTTAGAAGATATAAGGGATGCAGATCCTTGTCTGTATACCAGCCTCAAGCAAATATTGGAGATGGATTCTGATTTCGTTGATTCAGATGAATTAGGACTGACATTTGTTAGAGAGGTGGAGGAATTAGGACACAGGAAAGTGGTTGAGCTCTGCCCTGATGGGAAAACCCTTGTAGTAAATAGTAAGAACAGGGAGAAGTATGTTGATCTTCTAATACAGGATCGCTTCGTAACATCTATTTCTGAGCAGGTGTCACATTTTGCCAAAGGTTTTGCTGATATTCTTTCAAACTCAAAGCTCCAGCAGTACTTCTTTCAAAGTTTACAGCTTGAAGATCTTGATTGGATGCTGCATGGGAGTGAAGATACCATTTCTGTTGAAGATTGGAAAACACACACCGAGTACAATGGCTATAAAGAGACAGATATTCAGATATCTTGGTTTTGGGAGCAGATTGTTGGGAGAATGACAGCAGAACAAAGGAAGGTTCTTCTATTCTTTTGGACATCTGTAAAATATTTACCGGTCGAAGGTTTCCGTGGTTTAGCTTCCCGTCTCTACATATACAGATCCCATGAACCCGGTGATCGCCTTCCTTCATCTCACACTTGCTTTTACCGGCTGTGTTTCCCAGCTTATTCATCTATGGCTGTCATGCAAGATCGTCTTGATGTCATCACTCAAGAACACATTGGCTGCAGTTTTGGTACTTGGTGA 2556 0.4484 MSVIETPAVHHRSGGASDHHRHPSKRKFDDGEDEELSDLVSVRMKKEEAVNSWSELRSHLQFFVRMMSGGNTIVMQAYPDDSVKSIHERIQSMKGIPVFEQRLIYRGKQLQWEQTLAECSIQNDANLQLVGRMRSTEHPQAWQVINDMVSLVYRLCRGETVRDALKTIKGLIASYLNMTPRIDSDSASGYFQIFMSSNAPEVLVMLYMSPFAGNKDCADSSVRHFLSSCCNTLCKALHGQCARVVLEFCKLLRRVGYQDPLYLYCRSTFGSLLETAGVSYAGSDNGKGMILIQDIFPFVRELARSLLRDLDLSMESPSAAGLLLNDVGDFTAFLIPLRTGIMELQAIKDSMPQDKRHKDLLLAEEIGHLHRLYIDLLNKIEQCLQKMEQSLAGQEIAEGDNVCPAWSHYLTILKELNKISKLYDGAEEKLWSVLTRQRSVLCQLIVRYAKRTDEHQWILEHRCVTNFESRRHLAMMMFPEVKEDYEELHEMLIDRSQLLAESFEYIARAEPESLHAGLFMEFKNEEATGPGVLREWFLLVCQAIFNPQNALFVACPNDRRRFFPNPASKVHPLHLEYFSFAGRIIALALMHRVQVGIVFDRVFFLQLAGNYITLEDIRDADPCLYTSLKQILEMDSDFVDSDELGLTFVREVEELGHRKVVELCPDGKTLVVNSKNREKYVDLLIQDRFVTSISEQVSHFAKGFADILSNSKLQQYFFQSLQLEDLDWMLHGSEDTISVEDWKTHTEYNGYKETDIQISWFWEQIVGRMTAEQRKVLLFFWTSVKYLPVEGFRGLASRLYIYRSHEPGDRLPSSHTCFYRLCFPAYSSMAVMQDRLDVITQEHIGCSFGTW* 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2058 851 SUPERFAMILY Ubiquitin-like 61 148 IPR029071 -
Apr9g2058 851 Gene3D Hect, E3 ligase catalytic domains 490 716 - -
Apr9g2058 851 PRINTS Ubiquitin signature 71 91 IPR019956 -
Apr9g2058 851 PRINTS Ubiquitin signature 92 112 IPR019956 -
Apr9g2058 851 PRINTS Ubiquitin signature 113 134 IPR019956 -
Apr9g2058 851 Pfam Ubiquitin family 63 134 IPR000626 GO:0005515
Apr9g2058 851 SMART hect_3 508 849 IPR000569 GO:0004842
Apr9g2058 851 MobiDBLite consensus disorder prediction 1 33 - -
Apr9g2058 851 ProSiteProfiles Ubiquitin domain profile. 60 136 IPR000626 GO:0005515
Apr9g2058 851 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 50 849 - -
Apr9g2058 851 Gene3D Hect, E3 ligase catalytic domain 610 692 - -
Apr9g2058 851 CDD HECTc 489 849 IPR000569 GO:0004842
Apr9g2058 851 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 50 849 - -
Apr9g2058 851 SUPERFAMILY Hect, E3 ligase catalytic domain 485 837 IPR035983 GO:0004842
Apr9g2058 851 Gene3D Hect, E3 ligase catalytic domain 733 850 - -
Apr9g2058 851 SMART ubq_7 60 132 IPR000626 GO:0005515
Apr9g2058 851 Pfam HECT-domain (ubiquitin-transferase) 539 843 IPR000569 GO:0004842
Apr9g2058 851 Gene3D - 54 150 - -
Apr9g2058 851 ProSiteProfiles HECT domain profile. 510 851 IPR000569 GO:0004842
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2058 60 134 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.000 3.34e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2058 - - gmx:100796470 1509.2