Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2051 ATGGTTTCTACGGAGAACGATTCACACGCCAATGCAAACAAAACTCAGCGCCGCGTCGGAAGGTCCATGCGAACCGTACGCACCAATTTATCGCAACCCGACCACGCCACGTGCGTCTCCGACAACTTAACCGATTCACTCATCGAACTTGCCTCGCGAAACAACAACTCCGTTAAATCTTCCGTTATTGAGGAACAACTCCTTCAACTTTCTCACGCTTTCAGTGATTTCTCCGCTTGTAGCAGCGACATATCCGGGGAGCTTCAGAGGCTCGCCACTGTCTCATCTTCCGAACCTCCTGCTTTGGTTCCGCTGCTCCGGTGCAGTGACCCGTGGACGCAGGAACATGCCGTAACGGCATTGCTTAATCTGTCTCTTCTGGAAGATAACAAGGTACTGATAACGAGTGCGGGTGGTGTGAAGTCTTTGATATATGTGCTTAAGACGGGGACAGAGACTTCGAAGCAGAATGCGGCTTGTGCGCTTCTGAGCCTGGCTTTGGTGGAAGAAAACAAGTGTTCCATCGGTGCTTGCGGGGCGATTCCGCCGCTGGTTTCGTTGCTGTTGAGTGGTTCGAACAGAGGGAAGAAGGATGCATTGACGACGCTGTATAAGCTGTGTTCGGTGAGGCAGAACAAGGAGAGGGCGGTAAGCGCTGGAGCGGTGAAGCCGCTGGTGGAGCTGGTGGCGGAGGAAGGTAGCGGCATGGCGGATAAGGCGATGGTGGTGCTGAATAGCTTGGCGGGGATTGAGGAAGGGAAGGATGCGATTGTGGAACAAGGTGGAATTGCTGCGCTTGTGGAAGCCATTGAAGATGGGTCGGTGAAGGGAAAGGAGTTTGCTGTTTTGACTCTTGTTCAGCTGTGTTCTGACAGTGTTAGGAACAGAGGATTGCTTGTGAGGGAGGGTGGGATTCCTCCTCTTGTTGCTCTTTCTCAGACTGGGACTGTTCGTGCTAAGGACAAGGTGGAGACACTCCTTGGATATTTGAGAGAATCAAGACAAGAAGCGTGCTGTTCAAGTCCTTAG 1029 0.5238 MVSTENDSHANANKTQRRVGRSMRTVRTNLSQPDHATCVSDNLTDSLIELASRNNNSVKSSVIEEQLLQLSHAFSDFSACSSDISGELQRLATVSSSEPPALVPLLRCSDPWTQEHAVTALLNLSLLEDNKVLITSAGGVKSLIYVLKTGTETSKQNAACALLSLALVEENKCSIGACGAIPPLVSLLLSGSNRGKKDALTTLYKLCSVRQNKERAVSAGAVKPLVELVAEEGSGMADKAMVVLNSLAGIEEGKDAIVEQGGIAALVEAIEDGSVKGKEFAVLTLVQLCSDSVRNRGLLVREGGIPPLVALSQTGTVRAKDKVETLLGYLRESRQEACCSSP* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2051 342 Gene3D - 31 197 IPR011989 -
Apr9g2051 342 Pfam Armadillo/beta-catenin-like repeat 175 208 IPR000225 GO:0005515
Apr9g2051 342 Gene3D - 198 330 IPR011989 -
Apr9g2051 342 PANTHER U BOX DOMAIN-CONTAINING 99 338 - -
Apr9g2051 342 PANTHER U BOX DOMAIN-CONTAINING 13 97 - -
Apr9g2051 342 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE 99 338 - -
Apr9g2051 342 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE 13 97 - -
Apr9g2051 342 SUPERFAMILY ARM repeat 96 331 IPR016024 -
Apr9g2051 342 SMART arm_5 127 167 IPR000225 GO:0005515
Apr9g2051 342 SMART arm_5 250 290 IPR000225 GO:0005515
Apr9g2051 342 SMART arm_5 168 208 IPR000225 GO:0005515
Apr9g2051 342 SMART arm_5 86 126 IPR000225 GO:0005515
Apr9g2051 342 SMART arm_5 292 332 IPR000225 GO:0005515
Apr9g2051 342 MobiDBLite consensus disorder prediction 1 27 - -
Apr9g2051 342 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 220 262 IPR000225 GO:0005515
Apr9g2051 342 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 179 221 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2051 Apr-Chr9 28815405 28817812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2051 102 335 U-box Gene Family AT2G23140 50.000 1.23e-67 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2051 - - gmx:100792402 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2051 9 28815405 28817812 Apr1g1841 1 28123603 28125829 PCT