Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2048 ATGCAAACGTCCCAGAAACACCCTAATTCAGCTGGTGTGCATTTCTATCACCAACCTGTGCAAGGCATGTACCAAATATTGCAAAGCAATCTATGTCGCGATAGCAGCAGCCAGGACACTAGTCTTTCTTTTGAAACCTGCAAGGAGCAATACTATACCCTTGAATCATGCCCTGCATCCACTGGTTTCATGGATTGTGATTCTCCATCCTATGCTAGTGTATCATCTAACAGGACTCCAGTTTCTCCACAAGGTTCTCAATCATGTTATTCAGACCCCCACCCATTATCTGACAACACCTATGGATCACCAATAAGCGGGTTGTCTAGTGTTGATGATGGAAATGAACTCAAGCACAAACTTAAAGAACTGGAGATTTCGTTGTTGGGACCTGATGAATCAGACATTGTTGACAGTTGTGGCTGCTGCATCAACAGTGGCCTCCATGGAGCACCTAAATTGGCTGAATATAACTGGGATCAGATGGCAGAAAAGATCCCACAACTTGACTTGAAAGAAGTCCTCAAGCTATGTGCACAAGCTGTGTCTGATGATGATATTCCAACAGCAAGAGGTTGGATGGATAATGTGTTGGGGAAAATGGTATCAGTTGGTGGAGATCCAATCCAGAGGTTGGGTGCTTACTTGCTGGAGGGGCTAAGAGCAAGGTTGGAATCATCAGGGAATATGATCTACAAATCCTTGAAGTGTGAACAACCAACAAGCAATGAATTAATGAGTTACATGAGCATCCTGTATCAGATTTGCCCATACTGGAAGTTTGCATACAGATCAGCAAATGCTGTCATTGAAGAAGCAATGGCAAGTGAAACAAGAATTCACATAATTGATTTCCAAATTGCGCAGGGCTCACAGTGGCATTTACTTATCCAAGATCTTGCAAACAGGCCTGGGGGACCCCCTTCTCTCCGTGTAACAGGTGTTGATGATGCACAATCGTTTCATGCTCGAGGTGGAGGACTCGAGATTGTAGGGGAGAGGTTGTCAAATTTTGCCAAATCTTGTGGAGTTCCATTTGAGTTCCACAGTGCTGCAATGTCTGGCTGTGAGGTTGTGCGAGGAAACGTTGAAATTCGACGTGGGGAGGCTCTTGCTGTGAACTTTCCTTATGTATTGCATCACATGCCAGATGAGAGTGTGAGCACTGAGAACCACAGAGATAGGTTGTTGAGATTGGTGAAGAGCTTGTCTCCCAGGGTTGTTACCATTGTTGAGCAAGAATCCAACACCAACACTTCTCCTTTCTTTCACAGGTTTGTTGAGACATTGGACTATTATGCTGCTATGTTTGAATCAATTGACGTGGCTTCCTCCAGAGATGATAAGAAGCGGATTAGTGCGGAGCAGCACTGTGTCGCACGTGACATTGTCAACATGATAGCTTGTGAGGGGGTTGAGAGGGTTGAAAGGCATGAACTTTTTGGAAAGTGGAGGTCAAGACTCTCCATGGCTGGGTTTAAACAGAGCCCATTGAGTTCTTCAGTGATGGGTGCTACCCAAAATCTCTTGAAGGACTTCAATCAAAATTATAGGCTTAAACATAGAGATGGTGCTCTTTATCTTGGCTGGATGAATAGACCTATGGCCACCTCTTCTGCTTGGAGATGA 1629 0.4463 MQTSQKHPNSAGVHFYHQPVQGMYQILQSNLCRDSSSQDTSLSFETCKEQYYTLESCPASTGFMDCDSPSYASVSSNRTPVSPQGSQSCYSDPHPLSDNTYGSPISGLSSVDDGNELKHKLKELEISLLGPDESDIVDSCGCCINSGLHGAPKLAEYNWDQMAEKIPQLDLKEVLKLCAQAVSDDDIPTARGWMDNVLGKMVSVGGDPIQRLGAYLLEGLRARLESSGNMIYKSLKCEQPTSNELMSYMSILYQICPYWKFAYRSANAVIEEAMASETRIHIIDFQIAQGSQWHLLIQDLANRPGGPPSLRVTGVDDAQSFHARGGGLEIVGERLSNFAKSCGVPFEFHSAAMSGCEVVRGNVEIRRGEALAVNFPYVLHHMPDESVSTENHRDRLLRLVKSLSPRVVTIVEQESNTNTSPFFHRFVETLDYYAAMFESIDVASSRDDKKRISAEQHCVARDIVNMIACEGVERVERHELFGKWRSRLSMAGFKQSPLSSSVMGATQNLLKDFNQNYRLKHRDGALYLGWMNRPMATSSAWR* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2048 542 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 15 541 IPR005202 -
Apr9g2048 542 Pfam GRAS domain family 172 542 IPR005202 -
Apr9g2048 542 ProSiteProfiles GRAS family profile. 162 542 IPR005202 -
Apr9g2048 542 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 15 541 - -
Apr9g2048 542 MobiDBLite consensus disorder prediction 74 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2048 Apr-Chr9 28793060 28797387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2048 1 542 GRAS Transcription Factor Family AT4G17230 60.405 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Apr9g2048 GRAS 3.2e-122 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2048 - - gmx:100776109 951.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2048 9 28793060 28797387 Apr1g1845 1 28143965 28147905 PCT