Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2039 ATGGGTAGTGATGAAGCTCGAGAGTCATTGCTTTCAGAATCAAGAGATCATTCTCATGTCAATGAGAAAAGTGACCTCCAAAGAAGAAGGCCACGGCGTGGCAGTGCTTCAGAGAAAGATTTCAATCACCAAGAACAAAATATTGTCCAAAACCTTTTACACTCACAATGTATAGGTGCAAAACCACAAGCAGAATTCCATTTCAGGCCAATGATCTTGTTGTTAGCTGCATACCTTGGTGTAGGTACCCTATGCTTCCTTTTGACAAGTCATCAAATAAAGGGAATAAAAACCAATGGGTTTCTTGATGCCATTTACTTCTGTGTTGTGACAATGACTACTGTTGGATATGGAGATCTTGTGCCCAATAGCCCATTGGCAAAACTTCTTGCTTGCATTTATGTCTTCACTGGCATGGCTCTTGTTGGGTTAATTCTTAGCAAGGCAACAGATTACATTGTTGAAAAACAGGAAATCTTCCTAGTTAAAGCCATGTACAGGGGTGAGAAATTTGGTCCAGAAGAGCTTTCCAAAGAGGCTGAAACCAACAAAGTTAAATACAAATTCATGCTGGCGGCATCCACTTTCTTGGTGCTCATGGTTGTAGGAACTATTTTTCTGTATTTTATTGAAAATTTGGATTTTGTTGATGCCCTCTATTGTGTTTGTTCCACAGTCACAACTTTAGGTTATGGGGATAAAAGCTTCTCAACTATTGTTGGTCGTACTTTTGCTGTGTTCTGGATATTGAGCAGCACCATGTGTTTAGCACAGCTTTTTGCATATCTTGCTGAATTATATACTGAAGAAAGACAAAGATCACTGGCAAAATTGGTTCTTACTCGAAAGTTGTCACTTTTTGATCTTGAGGCAGCTGATCTTGATGGAGACCAAGTTGTCAGCGCTGCAGAGTTTGTTTTATACAAGTTGAAGGAAATGGGAAAGATCAAGCAAGAAGATATTTCACTTGTGATGGAGATTTTCAGAAAACTAGATTTTGATAAATCAGGAACTCTGACAGAAGCTGATCTCGTAATCTAA 1041 0.39 MGSDEARESLLSESRDHSHVNEKSDLQRRRPRRGSASEKDFNHQEQNIVQNLLHSQCIGAKPQAEFHFRPMILLLAAYLGVGTLCFLLTSHQIKGIKTNGFLDAIYFCVVTMTTVGYGDLVPNSPLAKLLACIYVFTGMALVGLILSKATDYIVEKQEIFLVKAMYRGEKFGPEELSKEAETNKVKYKFMLAASTFLVLMVVGTIFLYFIENLDFVDALYCVCSTVTTLGYGDKSFSTIVGRTFAVFWILSSTMCLAQLFAYLAELYTEERQRSLAKLVLTRKLSLFDLEAADLDGDQVVSAAEFVLYKLKEMGKIKQEDISLVMEIFRKLDFDKSGTLTEADLVI* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2039 346 MobiDBLite consensus disorder prediction 1 40 - -
Apr9g2039 346 SUPERFAMILY Voltage-gated potassium channels 67 155 - -
Apr9g2039 346 SUPERFAMILY Voltage-gated potassium channels 182 282 - -
Apr9g2039 346 ProSitePatterns EF-hand calcium-binding domain. 332 344 IPR018247 -
Apr9g2039 346 PRINTS Two pore domain K+ channel signature 110 138 IPR003280 GO:0005267|GO:0016020|GO:0071805
Apr9g2039 346 PRINTS Two pore domain K+ channel signature 227 236 IPR003280 GO:0005267|GO:0016020|GO:0071805
Apr9g2039 346 PANTHER OUTWARD RECTIFYING POTASSIUM CHANNEL PROTEIN 18 343 - -
Apr9g2039 346 MobiDBLite consensus disorder prediction 1 41 - -
Apr9g2039 346 Gene3D - 289 346 - -
Apr9g2039 346 SUPERFAMILY EF-hand 289 344 IPR011992 -
Apr9g2039 346 Gene3D - 47 171 - -
Apr9g2039 346 Gene3D - 172 285 - -
Apr9g2039 346 Pfam Ion channel 196 267 IPR013099 -
Apr9g2039 346 Pfam Ion channel 76 154 IPR013099 -
Apr9g2039 346 ProSiteProfiles EF-hand calcium-binding domain profile. 319 346 IPR002048 GO:0005509
Apr9g2039 346 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 18 343 IPR003280 GO:0005267|GO:0016020|GO:0071805
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2039 Apr-Chr9 28748018 28749568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2039 67 346 Ion Channels AT5G55630 59.643 1.92e-120 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2039 K05389 - gmx:100799492 566.229