Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2030 ATGGGTGAATATGACAACGAGTCAGGAGGTAAACGAAGGTTCTCACTCACAGAGTGCAGAGAACAAGAGAGGCTCCTTCCCATAGCGAACGTGAGCAGGATCATGAAGAAGGTGTTACCAGCGAACGCCAAGATTTCAAAGGAAGCAAAAGAGACGATGCAAGAGTGTGTATCAGAGTTCATCAGTATCATAACAGGAGAGGCGTCTGATAAGTGTCAGAAAGAGAAGAGGAAGACAATCAACGGTGATGATCTTCTTTGGGCCATCACCTCACTGGGCTTCGAAGGGTACGCGGAGACCCTCGAGGCTTACCTTCACAAGTACAGGGAAAATACTACCATCATTGGGAGGCAGCACTGTGCTCATGCTGCTACCCATCTTCTATGA 387 0.4806 MGEYDNESGGKRRFSLTECREQERLLPIANVSRIMKKVLPANAKISKEAKETMQECVSEFISIITGEASDKCQKEKRKTINGDDLLWAITSLGFEGYAETLEAYLHKYRENTTIIGRQHCAHAATHLL* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2030 128 PRINTS CCAAT-binding transcription factor subunit A signature 53 71 - -
Apr9g2030 128 PRINTS CCAAT-binding transcription factor subunit A signature 72 90 - -
Apr9g2030 128 PRINTS CCAAT-binding transcription factor subunit A signature 91 109 - -
Apr9g2030 128 SUPERFAMILY Histone-fold 22 112 IPR009072 GO:0046982
Apr9g2030 128 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3 1 124 - -
Apr9g2030 128 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 25 89 IPR003958 -
Apr9g2030 128 Gene3D Histone, subunit A 14 125 IPR009072 GO:0046982
Apr9g2030 128 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 124 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2030 Apr-Chr9 28690566 28690952 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2030 1 118 CCAAT-HAP3 Transcription Factor Family AT4G14540 71.311 2.05e-59 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Apr9g2030 CBFD_NFYB_HMF 2e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2030 K08065 - gmx:100305641 177.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2030 9 28690566 28690952 Apr1g1866 1 28280309 28281635 PCT