Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2028 ATGGATAGTGGAGGCTTTCATGGCTACCGCAAGCTCCCCAACACCTCCTCTGGGTTGAAGCTATCAGTGTCGGAGATGAGCATGAGGCAGGTAGCTACCGAGAACAACCACTCAACAGCAGAGGAGAACGAATGCACGGTGAGGGAGCAAGACCGTTTCATGCCAATTGCAAACGTGATAAGGATCATGCGTAAGATCCTTCCACCACACGCGAAGATTTCCGATGACGCCAAAGAAACGATCCAAGAATGCGTGTCTGAATACATCAGCTTCATAACTGGGGAGGCAAACGAGCGTTGCCAGAGGGAGCAACGCAAGACAATCACTGCTGAAGACGTGCTTTGGGCTATGAGCAAGCTTGGCTTCGATGACTACATCGAACCTCTCACCATATACCTTCACCGTTACCGTGAGCTTGAGGGTGATCGCACCTCTATGAGGGGTGAACCATTGGGGAAAAGGACAGTGGAATATGGGACTCTTGGTGTTGCTACTGCATTTGTTCCTCCCTTTCACATTGGACACCCAAATGGCTACTTTGGTGCTGCCATGGGGACTTACTTGAGGGATACACCTAATGCTGGCTCGTCTCAGTCTTCACTCTCAAATGCTGAACCCAATAGTAATGTTCAGTACAAATGA 642 0.4969 MDSGGFHGYRKLPNTSSGLKLSVSEMSMRQVATENNHSTAEENECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTIYLHRYRELEGDRTSMRGEPLGKRTVEYGTLGVATAFVPPFHIGHPNGYFGAAMGTYLRDTPNAGSSQSSLSNAEPNSNVQYK* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2028 213 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 3 164 IPR027113 GO:0001228|GO:0006355|GO:0016602
Apr9g2028 213 MobiDBLite consensus disorder prediction 191 213 - -
Apr9g2028 213 PRINTS CCAAT-binding transcription factor subunit A signature 81 99 - -
Apr9g2028 213 PRINTS CCAAT-binding transcription factor subunit A signature 100 118 - -
Apr9g2028 213 PRINTS CCAAT-binding transcription factor subunit A signature 119 137 - -
Apr9g2028 213 Gene3D Histone, subunit A 33 157 IPR009072 GO:0046982
Apr9g2028 213 SUPERFAMILY Histone-fold 50 149 IPR009072 GO:0046982
Apr9g2028 213 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 3 164 - -
Apr9g2028 213 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 53 117 IPR003958 -
Apr9g2028 213 ProSitePatterns NF-YB/HAP3 subunit signature. 84 100 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2028 Apr-Chr9 28672484 28674448 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2028 1 179 CCAAT-HAP3 Transcription Factor Family AT5G47670 61.194 1.43e-77 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Apr9g2028 CBFD_NFYB_HMF 5.9e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2028 K08065 - gmx:100800011 339.347