Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2020 ATGATGGACTCGGGAACTAGCGCTATACTTCCCCCAAAACATCATCAGAAGGTGACTGGGATCCAAACTGTAGAAACAAAAAACATTAAGCCTTCAGCACTGCAGGCTCAGAAGACAGATAAACCTGAACTTGTTGGTCCTAAAAGTTCATTGAAGTCTGTGCAAAACACACTGAAGCAAAAAACTGGGGACACTTTTGAAAACAAGTTGGGAATATCGAACCAAAAGGGATCTGCTGATTCGTTGAATGATAAATGTGATTCTGGATCCTCTGGTGCTTCCTTACCTGTTATTGACCAAACATCTGGAGAAGTTCACTCTGATGTTAATGAGAGCAGAAATCAAGAAAAAAAGACTTCAGAATATGGAAGTGTGAAGAGCAGTTTTGTTTCTGCTAAAGTTAGTGACGGGGCTGGCAGTCTTGCAAAGACCAGTGGAAGTGCCAAGATGAGTGACCGGGCTGATTTTGTTGAGAGTGGTAAGAGCAGTATTTGCAGAGGAAGTACAAGCAGTGATTTGAGTGATGAAAGTAGTTGTAGCAGTTTTAGTAGCGCTGTTAACAAGCCCCACAAGGCAAATGATTTGAGATGGGAAGCTATTCAAGCTGTTCGAGCTAGAGATGGGGTATTGGGTTTAGGTCATTTTAGACTACTGAAGAGGTTGGGTTGTGGGGATATTGGCAGTGTGTATCTTTCTGAATTGAGTGGAACTAAATGCTATTTTGCAATGAAGGTAATGGATAAAGGGTCCCTTGCTAGTCGCAAAAAACTACTCCGTGCCCAGACAGAGAGAGAAATACTGCAGTCATTGGACCACCCTTTTCTCCCAACTTTGTATACACATTTTGAGACAGAGAAGTTCTCGTGTTTGGTAATGGAATTCTGCCCTGGTGGAGACTTGCATACTCTTAGGCAGAGGCAGCCAGGGAAGCATTTTCCTGAGCAGGCAGTAAAATTTTATGTGGCGGAGGTCCTACTGGCTTTGGAGTACCTTCACATGCTTGGGGTTGTTTACCGTGATCTCAAGCCAGAAAATGTCCTTGTCAGGGAGGATGGACATATTATGCTCTCTGACTTTGATCTTTCCCTACGTTGTGCTGTTAGTCCAACCCTTGTCAAAACCTCATTCACAGATTCTGATCCTTTAAGAAAGAATCCTGTTTACTGTGCCCAGCCTGCATGTATTGAGCCACCTTCCTGCATCCAGCCATCATGTGTTGCTCCTACTACTTGCTTTTCACCTCGGCTCTTTTCTAGCAAATCAAAGAAGGAACGGAAACCCAAAACCGAAATTGGCAACCAAGTGAGTCCATTACCCGAGCTCATTGCTGAGCCTACTGATGCTCGGTCTATGTCATTTGTTGGAACGCATGAATACTTGGCGCCTGAGATCATCAAGGGTGAAGGTCATGGGAGTGCAGTTGATTGGTGGACTTTTGGAATCTTTCTATATGAGCTGTTGTTTGGAAAAACGCCATTCAAGGGATCTGGAAACCGAGCTACATTGTTTAATGTTGTAGGTCAGCCTCTGCGGTTTCCTGAAGCACCTGTTGTGAGTTTTGCTGCAAGGGATCTTATAAGGGGGTTGCTTGTAAAGGAACCTCAGCACAGATTGGCATATAAAAGAGGGGCTACTGAGATTAAACAACATCCCTTTTTTGAGGGTGTGAATTGGGCATTGATCCGGTGTGCTACCCCGCCAGAGATCCCAAAGCCAGTAGAGTTTGAGAAGATACCTTCTCCAGCTTCAGCAGCCAGTGAAAAGGCTGTCCATCATATGACAATACCAAATCAGAAAGGTTCTGATAATTACCTTGAGTTTGATTTCTTCTAG 1833 0.4408 MMDSGTSAILPPKHHQKVTGIQTVETKNIKPSALQAQKTDKPELVGPKSSLKSVQNTLKQKTGDTFENKLGISNQKGSADSLNDKCDSGSSGASLPVIDQTSGEVHSDVNESRNQEKKTSEYGSVKSSFVSAKVSDGAGSLAKTSGSAKMSDRADFVESGKSSICRGSTSSDLSDESSCSSFSSAVNKPHKANDLRWEAIQAVRARDGVLGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEVLLALEYLHMLGVVYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKTSFTDSDPLRKNPVYCAQPACIEPPSCIQPSCVAPTTCFSPRLFSSKSKKERKPKTEIGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPEAPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKPVEFEKIPSPASAASEKAVHHMTIPNQKGSDNYLEFDFF* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2020 610 Pfam Protein kinase domain 450 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g2020 610 Pfam Protein kinase domain 216 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g2020 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 336 348 IPR008271 GO:0004672|GO:0006468
Apr9g2020 610 ProSiteProfiles Protein kinase domain profile. 215 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g2020 610 CDD STKc_phototropin_like 214 577 - -
Apr9g2020 610 SUPERFAMILY Protein kinase-like (PK-like) 194 581 IPR011009 -
Apr9g2020 610 MobiDBLite consensus disorder prediction 49 108 - -
Apr9g2020 610 Gene3D Transferase(Phosphotransferase) domain 1 295 364 - -
Apr9g2020 610 Gene3D Phosphorylase Kinase; domain 1 214 294 - -
Apr9g2020 610 PANTHER FLIPPASE KINASE 1-RELATED 12 610 - -
Apr9g2020 610 SMART serkin_6 215 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g2020 610 MobiDBLite consensus disorder prediction 19 35 - -
Apr9g2020 610 Gene3D Transferase(Phosphotransferase) domain 1 446 571 - -
Apr9g2020 610 MobiDBLite consensus disorder prediction 1 122 - -
Apr9g2020 610 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 12 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2020 Apr-Chr9 28619317 28623739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2020 116 610 AGC Kinase Gene Family AT5G47750 85.915 0.0 867
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Apr9g2020 Pkinase 8.1e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2020 K08286 - gmx:100798088 991.875