Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2019 ATGAAACGCACAAACGACGACGTAGCCCCAACCGGGAAGCCAGTCTTCCTAACCAAAGCCCAGCGGGAGCAGCTCGCCCTTCAACGCCGCCAGGAAGAAATCGCCGAGCAGAAGCGCCGCCAGGAACAGCTCCTTTCCCGTTACCGCCCCTCCGATCCCGCCACCGATCCCAAACCCTCCTCCGACCGCGACCGAGACAGAGATAGGGATAGGGATAGGGATAGGGATAGGGATAGGGATAGGGATAGAGATAGAGACAGAGACAGAGATAGGGATAGAGACAGGGACAGAGACAGAGACAGAGAGCGAGAGCGCGAGCGTGACAGGGCACGCGATCGTGACCGCGAAGCCGAACGGCGGAACAGAGAGAGAGAGCGCGAAGAGGAGAGCAGAGCTCGGGAACGTGCTCGGTTGGAGAAATTGGCGGAGCGGGAGCGCGAGAAGGAGCTGGACTCGATAAAGGAGCAGTACCTTGGTTCCAAGAAGCCTAAGAAGCGCGTCATCAAGCCCAGCGAGAAGTTCCGCTTCTCCTTCGATTGGGAGAACACCGAGGACACATCCCGCGACATGAACGCCCTCTACCAGAACCCTCACGAGGCTCAGCTCCTCTTCGGCCGCGGCTTCCGCGCCGGCATGGACCGCCGCGAGCAGAAGAAGCTCGCCGCCAAAAACGAGAAGGAGATGCGCGAGCAAATCCGTAAGAAGGACGGCGTCGAAGAGAAACCTGAGGAGGCTGACGCACAACGGCGGAAGGAGGCTGCCGCCGATCTCTACGACACGTTTGACATGAGGGTGGACCGGCATTGGAGCGAGAAGAAGCTTGATGAGATGACGGAGAGGGATTGGCGTATATTCAGAGAGGACTACAACATCTCCTACAAGGGTTCGAAGATCCCTCGACCCATGCGGAGCTGGAATGAGAGCAAGCTGAGTCACGAGCTGTTGAAGGCCGTGGAGAAAGCTGGCTACAAAACCCCTTCTCCTATTCAGATGGCCGCTATTCCCCTTGGCTTGCAGCAGCGTGATGTCATTGGCATTGCTGAAACCGGTTCTGGGAAAACCGCTGCTTTTGTTCTTCCAATGTTGAGTTATATCACCAGGCTTCCTCCCATGAGTGAGGACAACGAGGCTGAGGGTCCCTATGCGGTTGTTATGGCCCCCACTCGCGAGCTCGCGCAGCAGATTGAGGATGAGACTGTTAAGTTTGCTCAGTATCTGGGCATCAAAGTGGTTTCCATTGTTGGTGGACAGTCCATTGAGGAGCAAGGGTTTAAGATTAGGCAGGGATGTGAGATTGTGATTGCCACTCCTGGTCGTTTGATTGATTGCTTGGAGCGGCGCTATGCTGTTCTTAATCAGTGCAATTATGTTGTTCTTGATGAGGCTGATCGGATGATTGATATGGGGTTTGAGCCCCAGGTGATGGGCGAGCTCGATGAGAAGAAGATTTACCGGACCACTTATATGTTCAGCGCCACCATGCCTCCGGCTGTGGAGAGGCTTGCTAGGAAATATTTAAGGAACCCTGTTGTGGTGACTATAGGAACTGCTGGAAAGGCAACTGACCTGATCAGCCAGCATGTGATCATGATGAAGGAATCCGAGAAATTTCACAAGCTTCAGAGATTGCTTGATGAACTTAATGACAAGACGGCGATTGTGTTTGTTAACACTAAGAAGAATGCAGATATGGTTGCCAAGAATTTGGACAAGGAGGGCTATCGCGTGACTACTTTGCACGGAGGGAAGTCACAGGAGCAGAGGGAAATTAGTCTTGAAGGGTTTAGGACCAAGAGATATAATGTTCTTGTTGCCACTGATGTTGCTGGACGTGGGATTGACATACCTGATGTGGCTCATGTCATCAACTACGATATGCCTGGGAATATTGAAATGTACACGCACCGTATTGGGCGTACTGGTCGTGCAGGAAAGACCGGTGTGGCCACGACATTCCTGACTCTTCAGGACACTGATGTCTTTTATGACCTCAAACAGATGCTCATTCAAAGTAATAGCCCTGTTCCACCGGAGCTGGCAAGGCATGAAGCTTCAAAATTCAAGCCAGGAACTATTCCTGACAGACCACCTAGACGAAATGACACTGTTTTTGCGCATTAG 2121 0.5281 MKRTNDDVAPTGKPVFLTKAQREQLALQRRQEEIAEQKRRQEQLLSRYRPSDPATDPKPSSDRDRDRDRDRDRDRDRDRDRDRDRDRDRDRDRDRDRDRDRERERERDRARDRDREAERRNREREREEESRARERARLEKLAEREREKELDSIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNALYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRKKDGVEEKPEEADAQRRKEAAADLYDTFDMRVDRHWSEKKLDEMTERDWRIFREDYNISYKGSKIPRPMRSWNESKLSHELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPMSEDNEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKFHKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDKEGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDTDVFYDLKQMLIQSNSPVPPELARHEASKFKPGTIPDRPPRRNDTVFAH* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2019 706 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 539 683 IPR001650 -
Apr9g2019 706 MobiDBLite consensus disorder prediction 219 251 - -
Apr9g2019 706 Gene3D - 264 516 IPR027417 -
Apr9g2019 706 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 665 IPR027417 -
Apr9g2019 706 Coils Coil 215 241 - -
Apr9g2019 706 CDD DEADc_DDX23 314 513 - -
Apr9g2019 706 MobiDBLite consensus disorder prediction 674 706 - -
Apr9g2019 706 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 334 512 IPR014001 -
Apr9g2019 706 Coils Coil 530 550 - -
Apr9g2019 706 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 303 331 IPR014014 GO:0003724
Apr9g2019 706 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 458 466 IPR000629 -
Apr9g2019 706 Pfam DEAD/DEAH box helicase 328 501 IPR011545 GO:0003676|GO:0005524
Apr9g2019 706 Gene3D - 517 704 IPR027417 -
Apr9g2019 706 SMART helicmild6 563 644 IPR001650 -
Apr9g2019 706 SMART ultradead3 322 527 IPR014001 -
Apr9g2019 706 Coils Coil 17 47 - -
Apr9g2019 706 MobiDBLite consensus disorder prediction 28 150 - -
Apr9g2019 706 Pfam Helicase conserved C-terminal domain 536 644 IPR001650 -
Apr9g2019 706 CDD SF2_C_DEAD 524 653 - -
Apr9g2019 706 PANTHER - 84 699 - -
Apr9g2019 706 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 84 699 - -
Apr9g2019 706 Coils Coil 107 151 - -
Apr9g2019 706 MobiDBLite consensus disorder prediction 28 46 - -
Apr9g2019 706 MobiDBLite consensus disorder prediction 681 706 - -
Apr9g2019 706 MobiDBLite consensus disorder prediction 56 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2019 Apr-Chr9 28611382 28615151 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2019 301 666 Eukaryotic Initiation Factors Gene Family AT3G19760 32.708 8.36e-63 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2019 K12858 - gmx:100799264 1094.34