Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2009 ATGTGCATTGGAAACCTGGGTGTAGATTGTGGCGACACTAACAGCAGCAACAGCACAATGGATCCTGTCAATGGGGGGAACACTCTCGCCAACAACCCTAATATTGCTTCCAAGCAGCGTTTACGCTGGACGCATGAGCTACATGAACGCTTTGTTGATGCTGTGGCGCAACTTGGTGGCCCAGATCGTGCCACACCTAAAGGTGTTCTCAGAGTTATGGGTGTGCAAGGCTTAACAATATACCATGTCAAAAGCCACTTACAGAAATATCGGCTAGCAAAATACCTACCCGACTCATCACCAGATGGGAAAAAGGTCGACAAGAAAGAAACAGGGGATATGCTTTCCAATGTAGATGGTTCACCTGGTATGCAGATTACTGAAGCATTAAAACTTCAAATGGAGGTGCAGAAGCGACTGCATGAGCAATTGGAGGTGCAGAGACAGCTACAATTACGGATAGAAGCCCAGGGTAAATACTTGAAGAAGATTATTGAAGAGCAACAACGACTCAGTGGGGTTCTTTCAGAAGCACCTGACTCTAGCATTGCAGTTCCAGTTCCCCAAGATACTTGCCAAGAACCCGTTAATGAGACTGACCCAGCAACACCTGCCCCAACCTCTGAGTGCCCCCTTCTGGAAAAAGTTTCCAATGAGCGTGTCCCAGCTAAGAGTCTTTCAATTGACGAATCTTTTTCCTCCCATCATGAACCATTGACACCAGATTCTTGTTGCCACGTGGGTTCCCCTATTGACAGCCCTAAAGGGGAGAGATCTACAAAAAAGCAACGGGTAAACATGGAGGGAGCATATTCTGAACCAGAAATGGTACTTCCGCATCAGATACTTGAGGCAAGCATGTCATCTTATCAGCAACCAAATGCAATTTTCCTTGCCCAAGAGCAATTTGGCCCTACATTCGGTTTGTCCGCTAGAAGTGATAAGGAAATGGAGCAGGATGGTAGCAGAAATCTGTGA 978 0.4652 MCIGNLGVDCGDTNSSNSTMDPVNGGNTLANNPNIASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSPDGKKVDKKETGDMLSNVDGSPGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLSEAPDSSIAVPVPQDTCQEPVNETDPATPAPTSECPLLEKVSNERVPAKSLSIDESFSSHHEPLTPDSCCHVGSPIDSPKGERSTKKQRVNMEGAYSEPEMVLPHQILEASMSSYQQPNAIFLAQEQFGPTFGLSARSDKEMEQDGSRNL* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2009 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 35 95 IPR017930 -
Apr9g2009 325 SUPERFAMILY Homeodomain-like 37 92 IPR009057 -
Apr9g2009 325 MobiDBLite consensus disorder prediction 99 122 - -
Apr9g2009 325 Gene3D - 37 96 - -
Apr9g2009 325 Pfam Myb-like DNA-binding domain 41 91 IPR001005 -
Apr9g2009 325 MobiDBLite consensus disorder prediction 232 264 - -
Apr9g2009 325 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 11 316 - -
Apr9g2009 325 Coils Coil 127 147 - -
Apr9g2009 325 MobiDBLite consensus disorder prediction 186 204 - -
Apr9g2009 325 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 11 316 IPR044848 GO:0003700
Apr9g2009 325 MobiDBLite consensus disorder prediction 13 33 - -
Apr9g2009 325 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 38 93 IPR006447 GO:0003677
Apr9g2009 325 Pfam MYB-CC type transfactor, LHEQLE motif 124 170 IPR025756 -
Apr9g2009 325 MobiDBLite consensus disorder prediction 181 210 - -
Apr9g2009 325 MobiDBLite consensus disorder prediction 99 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2009 Apr-Chr9 28521370 28524845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2009 73 315 G2-like Transcription Factor Family AT2G01060 62.705 2.35e-94 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Apr9g2009 Myb_DNA-binding 2.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2009 - - hbr:110654981 470.7