Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g2001 ATGTTAATAATGAGTGAAAGAATATTAGTAGTTCTGCTGCTTGTTTTTAATTATTTGTTGGTTGCAGAAGGAGAAACAGCTAATGAGGATTTGACCACCCTTTTGTCTCTTATGGATAACTTGAAGAACACCCCTAATAGTTGGGTGGGTTCAGATCCTTGTAATGATTGGGATGGAATTAAGTGCGAGGATTCACGTGTTACATCGATAACATTATCAAGCATTGGTTTGGCTGGCCAGCTTTCTGGAGATATTGGATCCCTATCTGAATTGGAGATTTTAGATCTATCTAACAACAAGGACTTAACTGGGACGCTTCCACAAACAATTGGAGAGTTGACCAAGCTGTCAACCTTAATTCTAGTTGGTTGTAACTTCAATGGTCTTATTCCGGACAGCATAGGAAAACTGCAGGAACTCCTTTCTTGTAAGAATGGATTCATGTTTTATTTATCTTTAAATTCCAATAGCTTTAGTGGAAATATTCCAAATTCCATTGGTAACCTATCAAAGCTTTCTTGGTTGGATTTAGCTGAGAATCAGCTTGAAGGGCCCATCCCAGTATCTAGTGGAAGCATATCTGGTCTTGATAAGTTACACCATGCCAAGCATTTTCATCTTGGGAAGAATAATCTCTCAGGCAGTATTCCTCCTCAACTTTTTAGCGGGGAAATGGCTCTCATTCATGTGCTATTGGAAAGTAATAAACTCACTGGCAACATTCCAGATACACTTGGACTAGTTCAGAGTCTGGAGGTGGTGCGTTTAGATCGTAATTCATTAAGCGGAACTGTGCCTCCAAACATCAACAATCTTACGAATGTTCAAGATCTGTACTTGTCCAACAATAAGCTGTTTGGTTCCCTGCCAAACCTTACTGGAATGAATGCTCTCAGCTACCTGGACATGAGCAACAATAGTTTTAAGCATTTGGATTTTCCAGAATGGTTTTCAACTCTCAAGTCCTTAACAACATTAAAAATGGAGAGAACACAACTTCAAGGACAGGTTCCAACTTCTTTGTTTAGTCTCGTCAGTTTACAGACTCTGGTGCTAAAAGACAACAAAATAAACGGAACCTTGTATATCGGCTCCTCCTACAGCAACCAGCTCCGACTTATTGATCTGGAGACTAATTCAGTTGACAACTTTATGCAAAAAGATGTAGCTTCAAACGTCAAGATAATACTTAAAGATAACCCAATTTGCCTAGAAACTGGAGAAGGAGCGAGCTACTGCTCCAATATTCAACCTGGTGCCTCATACACAACACCACCAAATAACTGCCAGCCTGGTCCCTGCAGTTCAGAACAGATTTCTAGTCCCAACTGTGTATGCGCATATCCATACACGGGAACCTTTGCTTTCAGAGCACCTTCCTTTTCAGATCTAGATAACAAAACTTACTACTTAATGCTTGAGGATTCTCTTATGAAGTCTTTTAAGTCTCATTATCTACCAGTGGATTCGGTTTCGTTGAGTCATCCAACTAAGGATTCAAATCAGTATCTTAAATTGAATTTACAAGTCTTCCCATCAGGACAAGATCATTTCAATCAAACAGGGGCTTTTATCATTGGTTTTCTGATAGGCAACCAAACTTTTAAGCCTCCTAAAGTTTTTGGACCATTTTATTTTATTGCAGATAAATATGCACACTTTGAATCGATGGAGTCGAGTAAATCTTCAATTAACATTGGAATCATAATTGGAGCAGCAGTTGGTGGTTCAGTCCTGCTACTGTTATTACTCCTAGCAGGTGTTTATGCCTTCCGACAGAAGAAAAGGGCTGAAAAAGCTATTGATCAAAGCAATCCTTTCAGACGCTGGGATACAGCTGAGAGCAACAGTGGCATCCCTCAGTTGAAAGAAGCCAGGATGTTTTCATTTGAAGAGCTTAAAAAATACACCAAAAGTTTTTCTCAAGCCAATGATATTGGATCTGGGGGTTTTGGGAAGGTTTATAAGGGAACCCTTCCCAATGGACAACTGGTAGCAATAAAACGAGCTCAGAAAGAATCCATGCAAGGAAAGCTTGAGTTTAAAGCTGAGATTGAGCTCCTATCAAGGGTAAATCACAAGAATCTGGTCACTCTTTTGGGGTTCTGCTTTGAACAAGGAGAACAAATGCTAATTTATGAGTATGTTCCAAATGGATCTTTAAAGGATACTCTCTTAGGGAAGTCAGGAATTAGATTGGATTGGATTGGAAGGCTAAAAGTTGCCCTTGGCACTGCCCGGGGTTTGGCTTATCTTCACGAACTTGTCAATCCTCCGATCATACACAGGGACATCAAATCAAATAATATTTTGTTGGATGAGCGCCTAAATGCTAAAGTTGCTGATTTTGGTCTCTCCAAATCTATGGTTGATTGCGAAAAAGATCATGTTACCACTCAAGTTAAAGGAACAATGGGTTACTTGGATCCAGAGTATTATATGTCTCAACAATTGACTGAGAAGAGTGATGTGTATAGCTTTGGAGTGCTAATGTTGGAGCTGATATCTGCAAGAAGGCCAATAGAAAAAGGGAAGTATATTGTGAAAGAGGTGAGGAAAGCACTTGATAAGACAAAAGAGTTATATGGTCTTCACGAAACAATTGACCCAAAAATTGGTTTAGCATCCCCAGTGAGTGGTTTTGAGAAGTTTGTGGATATGACCATGAAATGTGTTGAAGAGTCAGGTGCTGACAGGCCTAAAATGAGTGAAGTGGTAAGAGAAATCGAAAACATATTGAAGTTAGCTGGTTCAAACCCCACCGATGAATCACCATTCATCTCTTCTAGTTACGAGGATGTAAGCCGAGGCAGTTCCAGCCATCCTTATAATAGCAACGACTCCTTTGATTTGAGTGCAGGACTTCCATGTCGCTAG 2877 0.3983 MLIMSERILVVLLLVFNYLLVAEGETANEDLTTLLSLMDNLKNTPNSWVGSDPCNDWDGIKCEDSRVTSITLSSIGLAGQLSGDIGSLSELEILDLSNNKDLTGTLPQTIGELTKLSTLILVGCNFNGLIPDSIGKLQELLSCKNGFMFYLSLNSNSFSGNIPNSIGNLSKLSWLDLAENQLEGPIPVSSGSISGLDKLHHAKHFHLGKNNLSGSIPPQLFSGEMALIHVLLESNKLTGNIPDTLGLVQSLEVVRLDRNSLSGTVPPNINNLTNVQDLYLSNNKLFGSLPNLTGMNALSYLDMSNNSFKHLDFPEWFSTLKSLTTLKMERTQLQGQVPTSLFSLVSLQTLVLKDNKINGTLYIGSSYSNQLRLIDLETNSVDNFMQKDVASNVKIILKDNPICLETGEGASYCSNIQPGASYTTPPNNCQPGPCSSEQISSPNCVCAYPYTGTFAFRAPSFSDLDNKTYYLMLEDSLMKSFKSHYLPVDSVSLSHPTKDSNQYLKLNLQVFPSGQDHFNQTGAFIIGFLIGNQTFKPPKVFGPFYFIADKYAHFESMESSKSSINIGIIIGAAVGGSVLLLLLLLAGVYAFRQKKRAEKAIDQSNPFRRWDTAESNSGIPQLKEARMFSFEELKKYTKSFSQANDIGSGGFGKVYKGTLPNGQLVAIKRAQKESMQGKLEFKAEIELLSRVNHKNLVTLLGFCFEQGEQMLIYEYVPNGSLKDTLLGKSGIRLDWIGRLKVALGTARGLAYLHELVNPPIIHRDIKSNNILLDERLNAKVADFGLSKSMVDCEKDHVTTQVKGTMGYLDPEYYMSQQLTEKSDVYSFGVLMLELISARRPIEKGKYIVKEVRKALDKTKELYGLHETIDPKIGLASPVSGFEKFVDMTMKCVEESGADRPKMSEVVREIENILKLAGSNPTDESPFISSSYEDVSRGSSSHPYNSNDSFDLSAGLPCR* 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g2001 958 Gene3D Ribonuclease Inhibitor 293 417 IPR032675 -
Apr9g2001 958 ProSiteProfiles Protein kinase domain profile. 640 927 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g2001 958 ProSitePatterns Protein kinases ATP-binding region signature. 646 668 IPR017441 GO:0005524
Apr9g2001 958 MobiDBLite consensus disorder prediction 917 958 - -
Apr9g2001 958 CDD STKc_IRAK 646 912 - -
Apr9g2001 958 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 7 946 - -
Apr9g2001 958 SMART serkin_6 640 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g2001 958 Gene3D Transferase(Phosphotransferase) domain 1 716 927 - -
Apr9g2001 958 ProSitePatterns Serine/Threonine protein kinases active-site signature. 760 772 IPR008271 GO:0004672|GO:0006468
Apr9g2001 958 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 7 946 - -
Apr9g2001 958 Pfam Leucine rich repeat 298 357 IPR001611 GO:0005515
Apr9g2001 958 Gene3D Phosphorylase Kinase; domain 1 611 715 - -
Apr9g2001 958 Gene3D Ribonuclease Inhibitor 141 224 IPR032675 -
Apr9g2001 958 Gene3D Ribonuclease Inhibitor 28 140 IPR032675 -
Apr9g2001 958 Gene3D Ribonuclease Inhibitor 225 292 IPR032675 -
Apr9g2001 958 SUPERFAMILY L domain-like 41 383 - -
Apr9g2001 958 SUPERFAMILY Protein kinase-like (PK-like) 626 943 IPR011009 -
Apr9g2001 958 Pfam Protein tyrosine and serine/threonine kinase 643 908 IPR001245 GO:0004672|GO:0006468
Apr9g2001 958 MobiDBLite consensus disorder prediction 917 951 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g2001 Apr-Chr9 28460327 28467211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g2001 4 957 Receptor kinase-like Gene Family AT5G49760 55.255 0.0 973
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Apr9g2001 PK_Tyr_Ser-Thr 8.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g2001 - - gmx:100811702 1503.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2001 9 28460327 28467211 Apr9g2001 9 28460327 28467211 ECH
Apr9g2001 9 28460327 28467211 Apr1g1916 1 28720764 28727464 PCT