LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr9g1998	ATGGCAATTGCAGCGGCAAACTCATCACCCACCATGAGCCTGAGCCAAAGCCAGAGCCAAGAGGATGCCACAACCACCACCACCTCCACCACCAACGACAACAAACCCGACGATCACGAGCACGACATGGTCATGCCTGGCTTTCGCTTCCACCCAACTGAAGAAGAGCTCGTTGAATTCTACCTTCGCCGTAAGGTTGAGGGCAAGCGTTTCAATGTGGAACTCATTACTTTCCTTGATCTTTATCGCTATGACCCTTGGGAGCTTCCTGCCTTGGCAGCTATAGGTGAGAAGGAATGGTACTTCTATGTGCCCCGAGATAGAAAGTATCGCAACGGTGATCGTCCCAATCGTGTCACTACCTCTGGGTATTGGAAGGCAACGGGAGCTGACAGGATGATCCGAACAGAGAACTTTCGCTCAATCGGCCTCAAGAAAACCCTAGTTTTCTATTCTGGGAAAGCTCCCAAAGGTATCCGAACCAGTTGGATTATGAACGAGTATCGCTTGCCGCAACATGAAACTGAACGATATCAAAAGGCTGAGATATCGCTTTGCCGGGTGTACAAGAGAGCTGGAGTAGAGGATCATCCCTCCCTCCCTCGTTGTCTCCCGACCCGGCCATCCTCATCAAGAGCATCACATTCAGACAATAAGAAGCACAATGAAATAATGGTTCACCACAACATGGGATTTGTGGGACAATCGAAGCCAACTGAACAAATAGTTGACAAGATGAACGAAACGGAGGCAAGCAGTGATGTCACCACAACTCTTGGACTTTCCAAGTACAATGCTTACCGTGCTGCAATGGGTGCACTTAGCACTACAATGGGACTACCAGTGGTTCCAATGGACGAGGAAGCGTTGATGATGATGCAGCAGCAACAGCAGCAGCAACAACAACAAGCCAAGCAAGCTGCCACCATCTTCTCTGCTGGCCCTTCTAATTCGAACAATGCAGTGATGGATGATCTGAATAGGCTTGTGAGTTACCAACAGCAGTACTACAATGTTCAAAGCCATCCCAATCAGTTCTCCAGTTTGCTGATGCAACCATCACCAATGTCTCTCAACTCGCTACCAAATCCACTTCCAACCACCTTCTCTGACCGACTGTGGGAGTGGAATCCAATTCCTGAGCCAAATCAAGAGTACAGCAACATGTCCTTCAAGTAA	1179	0.4877	MAIAAANSSPTMSLSQSQSQEDATTTTTSTTNDNKPDDHEHDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKAEISLCRVYKRAGVEDHPSLPRCLPTRPSSSRASHSDNKKHNEIMVHHNMGFVGQSKPTEQIVDKMNETEASSDVTTTLGLSKYNAYRAAMGALSTTMGLPVVPMDEEALMMMQQQQQQQQQQAKQAATIFSAGPSNSNNAVMDDLNRLVSYQQQYYNVQSHPNQFSSLLMQPSPMSLNSLPNPLPTTFSDRLWEWNPIPEPNQEYSNMSFK*	393

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Apr9g1998	392	MobiDBLite	consensus disorder prediction	197	218	-	-
Apr9g1998	392	SUPERFAMILY	NAC domain	44	190	IPR036093	GO:0003677\|GO:0006355
Apr9g1998	392	MobiDBLite	consensus disorder prediction	1	32	-	-
Apr9g1998	392	Pfam	No apical meristem (NAM) protein	46	170	IPR003441	GO:0003677\|GO:0006355
Apr9g1998	392	MobiDBLite	consensus disorder prediction	1	43	-	-
Apr9g1998	392	PANTHER	NAC DOMAIN-CONTAINING PROTEIN 72-LIKE	24	387	-	-
Apr9g1998	392	PANTHER	PROTEIN CUP-SHAPED COTYLEDON 2-RELATED	24	387	-	-
Apr9g1998	392	ProSiteProfiles	NAC domain profile.	44	191	IPR003441	GO:0003677\|GO:0006355
Apr9g1998	392	Gene3D	NAC domain	53	194	IPR036093	GO:0003677\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr9g1998	Apr-Chr9	28432837	28435414	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr9g1998	43	216	NAC Transcription Factor Family	AT2G02450	88.506	2.35e-114	338

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Apr9g1998		NAM	3.9e-34	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr9g1998	-		-	gmx:100792622	621.313

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr9g1998	9	28432837	28435414	Apr9g1998	9	28432837	28435414	ECH

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