Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1998 ATGGCAATTGCAGCGGCAAACTCATCACCCACCATGAGCCTGAGCCAAAGCCAGAGCCAAGAGGATGCCACAACCACCACCACCTCCACCACCAACGACAACAAACCCGACGATCACGAGCACGACATGGTCATGCCTGGCTTTCGCTTCCACCCAACTGAAGAAGAGCTCGTTGAATTCTACCTTCGCCGTAAGGTTGAGGGCAAGCGTTTCAATGTGGAACTCATTACTTTCCTTGATCTTTATCGCTATGACCCTTGGGAGCTTCCTGCCTTGGCAGCTATAGGTGAGAAGGAATGGTACTTCTATGTGCCCCGAGATAGAAAGTATCGCAACGGTGATCGTCCCAATCGTGTCACTACCTCTGGGTATTGGAAGGCAACGGGAGCTGACAGGATGATCCGAACAGAGAACTTTCGCTCAATCGGCCTCAAGAAAACCCTAGTTTTCTATTCTGGGAAAGCTCCCAAAGGTATCCGAACCAGTTGGATTATGAACGAGTATCGCTTGCCGCAACATGAAACTGAACGATATCAAAAGGCTGAGATATCGCTTTGCCGGGTGTACAAGAGAGCTGGAGTAGAGGATCATCCCTCCCTCCCTCGTTGTCTCCCGACCCGGCCATCCTCATCAAGAGCATCACATTCAGACAATAAGAAGCACAATGAAATAATGGTTCACCACAACATGGGATTTGTGGGACAATCGAAGCCAACTGAACAAATAGTTGACAAGATGAACGAAACGGAGGCAAGCAGTGATGTCACCACAACTCTTGGACTTTCCAAGTACAATGCTTACCGTGCTGCAATGGGTGCACTTAGCACTACAATGGGACTACCAGTGGTTCCAATGGACGAGGAAGCGTTGATGATGATGCAGCAGCAACAGCAGCAGCAACAACAACAAGCCAAGCAAGCTGCCACCATCTTCTCTGCTGGCCCTTCTAATTCGAACAATGCAGTGATGGATGATCTGAATAGGCTTGTGAGTTACCAACAGCAGTACTACAATGTTCAAAGCCATCCCAATCAGTTCTCCAGTTTGCTGATGCAACCATCACCAATGTCTCTCAACTCGCTACCAAATCCACTTCCAACCACCTTCTCTGACCGACTGTGGGAGTGGAATCCAATTCCTGAGCCAAATCAAGAGTACAGCAACATGTCCTTCAAGTAA 1179 0.4877 MAIAAANSSPTMSLSQSQSQEDATTTTTSTTNDNKPDDHEHDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKAEISLCRVYKRAGVEDHPSLPRCLPTRPSSSRASHSDNKKHNEIMVHHNMGFVGQSKPTEQIVDKMNETEASSDVTTTLGLSKYNAYRAAMGALSTTMGLPVVPMDEEALMMMQQQQQQQQQQAKQAATIFSAGPSNSNNAVMDDLNRLVSYQQQYYNVQSHPNQFSSLLMQPSPMSLNSLPNPLPTTFSDRLWEWNPIPEPNQEYSNMSFK* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1998 392 MobiDBLite consensus disorder prediction 197 218 - -
Apr9g1998 392 SUPERFAMILY NAC domain 44 190 IPR036093 GO:0003677|GO:0006355
Apr9g1998 392 MobiDBLite consensus disorder prediction 1 32 - -
Apr9g1998 392 Pfam No apical meristem (NAM) protein 46 170 IPR003441 GO:0003677|GO:0006355
Apr9g1998 392 MobiDBLite consensus disorder prediction 1 43 - -
Apr9g1998 392 PANTHER NAC DOMAIN-CONTAINING PROTEIN 72-LIKE 24 387 - -
Apr9g1998 392 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 24 387 - -
Apr9g1998 392 ProSiteProfiles NAC domain profile. 44 191 IPR003441 GO:0003677|GO:0006355
Apr9g1998 392 Gene3D NAC domain 53 194 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1998 Apr-Chr9 28432837 28435414 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1998 43 216 NAC Transcription Factor Family AT2G02450 88.506 2.35e-114 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr9g1998 NAM 3.9e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1998 - - gmx:100792622 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1998 9 28432837 28435414 Apr9g1998 9 28432837 28435414 ECH