Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1995 ATGGAAGGAATACCGCACCCTATCCCAAGAACAGTGGAAGAAGTTTTCAGCGACTTTAAGGGTAGACGTGCTGGTTTGATTAAGGCTCTCACTACCGACGTTGAAAAGTTTTACCAGCTCTGCGATCCTGAGAAGGAGAATTTGTGTCTATATGGGTTTCCAAATGAAACATGGGAAGTGAATTTGCCCGTTGAGGAAGTGCCTCCTGAACTTCCTGAGCCAGCATTAGGTATAAACTTTGCTAGGGATGGCATGCAAGAGAAGGACTGGTTATCACTGGTTGCAGTTCACAGTGACTCATGGCTGCTTGCCGTTGCTTTCTATTTTGGTGCCCGCTTTGGATTTGGTAAGAATGAAAGGAAAAGGCTTTTTCAGATGATAAATGATCTGCCAACTATCTTCGAACTTGTGACAGGAAGTGCTAAGCAATCAAAGGACCAACAGGCTGCTCACAACAATGGTAGCAAATGCAAATCAAGTGGAAAGTCTTCGACCAAAGGAATGAAGATATCACCCAAAGAAGAGGATGAGAGTGGAGAAGAAGAGGACGAGGAGGAGGATGAACAAGGTGCAACATGTGGTGCCTGCGGTGATAATTATGGCAATGATGAATTCTGGATCTGTTGTGATATGTGTGAGAGATGGTTCCATGGTAAATGTGTTAAAATTACTCCTGCTAAGGCTGAGCACATCAAGCAATACAAATGCCCAAGCTGCAGTAGCAAGAGGGCAAGAGTTTAA 741 0.4426 MEGIPHPIPRTVEEVFSDFKGRRAGLIKALTTDVEKFYQLCDPEKENLCLYGFPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPTIFELVTGSAKQSKDQQAAHNNGSKCKSSGKSSTKGMKISPKEEDESGEEEDEEEDEQGATCGACGDNYGNDEFWICCDMCERWFHGKCVKITPAKAEHIKQYKCPSCSSKRARV* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1995 246 ProSiteProfiles Zinc finger PHD-type profile. 190 242 IPR019787 -
Apr9g1995 246 Pfam Alfin 11 138 IPR021998 GO:0006355|GO:0042393
Apr9g1995 246 Pfam PHD-finger 193 241 IPR019787 -
Apr9g1995 246 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR-RELATED 8 246 - -
Apr9g1995 246 CDD PHD_AL_plant 193 242 IPR044104 -
Apr9g1995 246 ProSitePatterns Zinc finger PHD-type signature. 193 239 IPR019786 -
Apr9g1995 246 SMART PHD_3 192 240 IPR001965 -
Apr9g1995 246 MobiDBLite consensus disorder prediction 144 191 - -
Apr9g1995 246 SUPERFAMILY FYVE/PHD zinc finger 181 243 IPR011011 -
Apr9g1995 246 MobiDBLite consensus disorder prediction 176 191 - -
Apr9g1995 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 182 241 IPR013083 -
Apr9g1995 246 MobiDBLite consensus disorder prediction 144 167 - -
Apr9g1995 246 PANTHER CPG BINDING PROTEIN 8 246 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1995 Apr-Chr9 28411161 28416802 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1995 1 243 Alfin-like Transcription Factor Family AT1G14510 78.629 3.05e-131 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Apr9g1995 Alfin 4.8e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1995 - - gmx:100807826 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1995 9 28411161 28416802 Apr9g1995 9 28411161 28416802 ECH