Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1994 ATGTCAGATATGCGAGTGTCTGATCCAAGTAAGCTCCATTTGAAGAAGGAGCTGACCCAAATCAGGAAGGCTGCAAGAGTACTGAGAGATCCTGGCACCACTTCTTCTTGGAAGTCACCACTCAGTTCCTCAAGATCCGTTGCTGCATGGAACAGAGACAGTGCCAGCAGAAGGTTCACTCCCAACTCTCAACTCCATTCACTTCCCAACAACAATGACAAAGATAAGGAGAAGAGGGTCTTCTTGTGCAATTGGAAGAACTACAAATCCTCCAGTGAGAAACACAACGAGGAGGAGGAGGAGGAAGAAGAAGAAGATGATGGTGGTGGATCGTCGTCGCTTCTCGGGGACAGAGAGAGCTTGAGCGATGCTCGCAATGGTTGCGATTCAAAAAGTGATACTTACTTAGGTGGTGGCACTCGTTCTTCCATTTTCCGATGTGGAGATGCGAATCTTGTTTCCTTGGGCACACCCGCAGCTAGAAGGACAGCCCCGGTTAAGAAGAAGAGTAAGAAAAGCAACCCCCATTTTGATATTTTAGCAAAGTATCAACACCATAGGGATGACTCTGTTGAACATTCTGATGATACTGAAGATTACTGTAATTCTGAGGATGTGAGACCGGTTTCTGGGACTTCCCCTTTGCTTCTGAAACTCAAAAATAAGAATTGGTCTCGTTCTTCCTCCAAGTTTATGAGGAGAAGCCGAAAAGAGGACTCTTCTTATTCTTATAGCACCCCTGCATTGTCAACCAGTTCTTACAATAGGTACGGTCACAGGTATCCAAGCACTGTTGGATCCTGGGATGGCACCACCACCTCAGTGAATGATGGTGATGATGAGATTGATGATCATTTGGATTTGCCTGGCCGCCAAGGATGCGGAATTCCTTGCTATTGGTCCAAGAGAACGCCCAAACATAGAGGAATGTGTGGGAGTTGTTATTCTCCTTCACTGTCGGACACTTTGAGGAGGAAAGGAAGCAGCATTCTCTGTGGCAGTCAAACTATTTATCCGGGACATCGCAGATCCACCTCTGCCTCCCATAACCGGAGACTTTCTTTGAGGAGTGCTCGAGGTGTTATACCATTGCTCACTAACAGTGGTGATGTTAGAGAAGGGTCGTCTATGGGAACTGGTAGAAGTGATGATGAACTTTCCACAAACTTTGGGGAGCTTGATCTTGAGGGATTGAGCCGGTTGGATGGAAGAAGGTGGTCGTCAAGTTGTAGGAGTCAAGAGGGACTGGAGATTGTAGCTCTTAATGGGGAAGGAGAAGGGGAAGATGAAGGCACACCAGAAAATAGTCGAAGTTTCAGCCAGAAGTATAAGCCTATGATTTTTGGTGAACTGATTGGACAGAATATTGTGGTTCAGTCTCTTATCAACGCTGTTTCGAGGGGACGAATTGCTCCCGTCTATCTTTTTCAAGGTCCCCGTGGGACTGGTAAATCATCAACAGCAAGGATATTTGCTGCTGCCCTGAATTGTGTGAGTCCTGATGAGAGGAAGCCTTGTGGCTACTGCAGGGAGTGTGCTGATTTCATTTCTGGTAAGAGCAGTGATCTGCTGGAAGTTGATGGAACCAATAAGAAAGGAATTGATAAAGCTAGATATCTACTGAAAAGATTTTCAGCTGGGCCATCATCAGTCTCCTCACGATATACAGTTTTTGTTATTGATGAGTGCCACTTGTTGCCCTCCAAGACGTGGCTGGGATTTCTCAAATTTCTGGAAGAACCACCTCAGCGAGTTGTATTCATATTCATAACATCTGATCTTGACAATGTGCCACGAACAATACAATCTCGATGCCAGAAATACCTCTTTAATAAAATTAAAGATGGGGATATTGTGACCAGGTTGAGGAAAATATCTACTCATGAGAACCTGGATGTTGAAGCAGATGCACTGGACCTCATTGCTATGAATGCGGACGGTTCACTTCGAGATGCAGAAACAATGTTGGAACAGCTTGGTTTGCTGGGGAAAAGAATTACTACTGCTCTTGTCAATGAACTTGTTGGAGTTGTTTCAGATGAAAAATTATTGGAACTTTTGGAGTTAGCAATGTCATCAGACACTGTAGAGACAGTGAAAAGAGCCAGAGAACTGATGGACTCTGGAGTTGATCCAATGGTTTTGATGTCTCAACTAGCCGGCCTTATTATGGACATAATTGCTGGGTCATATACAGTCATTGATGCCAAACCTGATGATTCATTCTTTGGTGGACGGAGTTTGAATGAATCAGAATTGGAGAGGTTAAAGAATGCTTTGAAGCTTCTCTCAGAAGCTGAGAAGCAGATAAGGACATCCAGTGAACGCTCAACATGGTTCACTGCTACTCTGTTACAGCTTGGTTCTATACCTTCTCCTGATCTTACTCAATCGGGCAGCAGCAGGAGGCAGAGCTGCAAGACAACTGAGGATGATCCATCAAGTGCTTCAAGAGATGTTACTTCTTGCAAGCACAAGTCAGATGTTCAATATATGCCTCGAAAGTCAACATACACTGCATCCCAGCAAAAGATGGTAAATGACAATTCCAGCCATCAAAAGGATATGTCCTCAAAGATTGATGGTTTCAGCTTGAAATCCAAGCCAGTTATAGATGATGGCTCCACAGTGGTCTCATCTGATGATCATATGGTTGGGAATACAATGTTTAGATGCATAGATTCAGGGAAGTTAAGTGAAATCTGGGTGCACTGTATTGGGAGATGTCACTCTAAGACATTGAAGCAGCTGCTACACAGCCATGGAAAGCTTGTGTCCGTATGTGAAGTAGAAGGTATTTTGGTAGCCTATGTTGCTTTCAGAGACGCAGATATTAAAGTTAGGGCTGAGAGGTTCTTAAGAAGCATTACAAATTCCATGGAAATGGTTCTTAGACGCAATGTGGAGGTCAGAATAATACACTTGCCAGATGGTGAAGGTGAAAATCAGGTAAATCTACTGGGCCAAAAGCAGGCAGAGTCAACCATGGCAGGTGAAAAGGAACAAAGAGGTGGTCATATGAATGGAACAGAGTCTTATTCTAGTCTGCCTCCTTTACTGGATGGAAATCTTCAATCTACCTCCGGTTCATCAGATATTCTGGCAGAAGGAAATGGTGTGAGGGAGAGGAGACATGATAATCCAATGCAGAGAATTGAATCCATCATTCGTGAGCAGAGGCTGGAAACTGCCTGGTTACAGGCTGTAGAAAAAGGTTCCCCTGGATCATTAAGTCGTTTGAGACCGGAGAAGAATCAAGTCCTGCCGCAGGATGGTGTGTATTGTGTAAACCAAATGGAGTCCATGGATTCAACAAGATTTTCCTCTCACCAGCATTGGGAAGATGACCCGAATAATGAAGTCAAAGTTTTGAGTGTTAAAAATGGAAGGGTCCTACAGAAGGATCAGATTGGTAAAAGGGCAGATTGTTATCCCATGTCCCCAAGTTTATTGCATGACAGCAGTTTAGCAACAATTTCTGTAAAAGACAATCTGGGATATGAATCGGGGTCGGGAGCTGGAGGTTGTGGATTTTTATGTTGGAATAAGTCGAAGCCAAGAAGGATAATAAAGGTAAAAGGGGGCACCCCAGTTAGAGGGCGTAAAGTTGGGCGTTTTGCATTGTTTGGTGAGTGCGGTAAGCCTAAGAAAAAGGAGCGGAGAAGATAA 3669 0.4424 MSDMRVSDPSKLHLKKELTQIRKAARVLRDPGTTSSWKSPLSSSRSVAAWNRDSASRRFTPNSQLHSLPNNNDKDKEKRVFLCNWKNYKSSSEKHNEEEEEEEEEDDGGGSSSLLGDRESLSDARNGCDSKSDTYLGGGTRSSIFRCGDANLVSLGTPAARRTAPVKKKSKKSNPHFDILAKYQHHRDDSVEHSDDTEDYCNSEDVRPVSGTSPLLLKLKNKNWSRSSSKFMRRSRKEDSSYSYSTPALSTSSYNRYGHRYPSTVGSWDGTTTSVNDGDDEIDDHLDLPGRQGCGIPCYWSKRTPKHRGMCGSCYSPSLSDTLRRKGSSILCGSQTIYPGHRRSTSASHNRRLSLRSARGVIPLLTNSGDVREGSSMGTGRSDDELSTNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVALNGEGEGEDEGTPENSRSFSQKYKPMIFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKSSTARIFAAALNCVSPDERKPCGYCRECADFISGKSSDLLEVDGTNKKGIDKARYLLKRFSAGPSSVSSRYTVFVIDECHLLPSKTWLGFLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVTRLRKISTHENLDVEADALDLIAMNADGSLRDAETMLEQLGLLGKRITTALVNELVGVVSDEKLLELLELAMSSDTVETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYTVIDAKPDDSFFGGRSLNESELERLKNALKLLSEAEKQIRTSSERSTWFTATLLQLGSIPSPDLTQSGSSRRQSCKTTEDDPSSASRDVTSCKHKSDVQYMPRKSTYTASQQKMVNDNSSHQKDMSSKIDGFSLKSKPVIDDGSTVVSSDDHMVGNTMFRCIDSGKLSEIWVHCIGRCHSKTLKQLLHSHGKLVSVCEVEGILVAYVAFRDADIKVRAERFLRSITNSMEMVLRRNVEVRIIHLPDGEGENQVNLLGQKQAESTMAGEKEQRGGHMNGTESYSSLPPLLDGNLQSTSGSSDILAEGNGVRERRHDNPMQRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEKNQVLPQDGVYCVNQMESMDSTRFSSHQHWEDDPNNEVKVLSVKNGRVLQKDQIGKRADCYPMSPSLLHDSSLATISVKDNLGYESGSGAGGCGFLCWNKSKPRRIIKVKGGTPVRGRKVGRFALFGECGKPKKKERRR* 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1994 1222 MobiDBLite consensus disorder prediction 1007 1034 - -
Apr9g1994 1222 PANTHER PROTEIN STICHEL-LIKE 1 164 1160 - -
Apr9g1994 1222 SMART AAA_5 470 620 IPR003593 -
Apr9g1994 1222 Gene3D - 615 676 - -
Apr9g1994 1222 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 438 787 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Apr9g1994 1222 CDD HLD_clamp_pol_III_gamma_tau 613 676 IPR045085 -
Apr9g1994 1222 MobiDBLite consensus disorder prediction 791 857 - -
Apr9g1994 1222 MobiDBLite consensus disorder prediction 366 388 - -
Apr9g1994 1222 SUPERFAMILY post-AAA+ oligomerization domain-like 684 785 IPR008921 GO:0003677|GO:0006260
Apr9g1994 1222 MobiDBLite consensus disorder prediction 55 74 - -
Apr9g1994 1222 MobiDBLite consensus disorder prediction 55 69 - -
Apr9g1994 1222 Coils Coil 746 776 - -
Apr9g1994 1222 MobiDBLite consensus disorder prediction 32 50 - -
Apr9g1994 1222 MobiDBLite consensus disorder prediction 832 857 - -
Apr9g1994 1222 MobiDBLite consensus disorder prediction 805 831 - -
Apr9g1994 1222 MobiDBLite consensus disorder prediction 91 133 - -
Apr9g1994 1222 MobiDBLite consensus disorder prediction 369 386 - -
Apr9g1994 1222 MobiDBLite consensus disorder prediction 24 50 - -
Apr9g1994 1222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 462 658 IPR027417 -
Apr9g1994 1222 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 164 1160 - -
Apr9g1994 1222 MobiDBLite consensus disorder prediction 992 1034 - -
Apr9g1994 1222 MobiDBLite consensus disorder prediction 186 207 - -
Apr9g1994 1222 Pfam DNA polymerase III subunits gamma and tau domain III 666 787 IPR022754 GO:0003887
Apr9g1994 1222 Gene3D - 430 611 IPR027417 -
Apr9g1994 1222 CDD AAA 452 610 - -
Apr9g1994 1222 Pfam DNA polymerase III, delta subunit 453 613 - -
Apr9g1994 1222 MobiDBLite consensus disorder prediction 420 439 - -
Apr9g1994 1222 MobiDBLite consensus disorder prediction 186 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1994 Apr-Chr9 28399409 28406726 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1994 434 728 Core DNA Replication Machinery Family AT1G21690 24.013 3.08e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1994 - - gmx:100791561 2031.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1994 9 28399409 28406726 Apr9g1994 9 28399409 28406726 ECH