Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1989 ATGGAACTTTCTAGTCAAGAAGGAGAAATCCCAATCCCGATAAACAGCACTACTTCAACTTATGGCGGGGGACATGGTAATGGACATGGGCATGGACATGGGCTCATGATTCATCATGACCCTCCACACCATAACCACATTCTATCATCCTCAGCAGTAGCACCTCCAAATGGCACCTCCACAATGCAAGAGGAACATGGAGGGTACAAGAAAGTGGTGAGGTACAGAGAATGCCTGAAGAACCATGCAGCTGCAATGGGAGGGAATGCGACAGATGGGTGTGGAGAGTTCATGCCAAGTGGAGAAGAAGGCACCATAGAGGCACTCAACTGTTCTGCTTGCCATTGCCACAGAAACTTCCACAGAAAAGAAGTAGAAGGTGAACCCTCTCCATGTGACTACCACATCCACAGGCAACTGGGAAGGAAATTCATCTTAGGACCTCACAAGAACATGCTTCCACCAGAGGCTCTTGGCTACGCTACAGGTAACATCCTACCTTCTAGAAGTGTACCACCTCACCAGATGATAATGCCCTACAACATAGGACCCCTCCCTTCAGAATCTGATGAGCAAGAAGAGGGTGGCGGTGGAATAGTGCAGGCTAGACCCACTCAACTCGTGAAGAAAAGGTTCAGGACAAAGTTCACTCAAGACCAAAAGGACAAAATGCTCAACTTTGCTGAGAAGGTGGGTTGGAAAATCCAGAAGCAAGAGGAGTCTGTGGTGCAACAGTTCTGCCAAGAGATTGGGGTTAAAAGAAGAGTGCTCAAGGTTTGGATGCATAACAATAAGCACAATCTCGCCAAGAAGAATCCCCCAAATGCACCTTAA 834 0.4772 MELSSQEGEIPIPINSTTSTYGGGHGNGHGHGHGLMIHHDPPHHNHILSSSAVAPPNGTSTMQEEHGGYKKVVRYRECLKNHAAAMGGNATDGCGEFMPSGEEGTIEALNCSACHCHRNFHRKEVEGEPSPCDYHIHRQLGRKFILGPHKNMLPPEALGYATGNILPSRSVPPHQMIMPYNIGPLPSESDEQEEGGGGIVQARPTQLVKKRFRTKFTQDQKDKMLNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNPPNAP* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1989 277 MobiDBLite consensus disorder prediction 1 24 - -
Apr9g1989 277 Gene3D - 200 271 - -
Apr9g1989 277 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 75 124 IPR006456 -
Apr9g1989 277 SUPERFAMILY Homeodomain-like 206 270 IPR009057 -
Apr9g1989 277 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4-LIKE 39 273 - -
Apr9g1989 277 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 209 265 IPR006455 -
Apr9g1989 277 ProSiteProfiles Cytochrome c family profile. 88 232 IPR009056 GO:0009055|GO:0020037
Apr9g1989 277 Pfam ZF-HD protein dimerisation region 73 125 IPR006456 -
Apr9g1989 277 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 39 273 - -
Apr9g1989 277 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 74 125 IPR006456 -
Apr9g1989 277 MobiDBLite consensus disorder prediction 1 66 - -
Apr9g1989 277 MobiDBLite consensus disorder prediction 50 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1989 Apr-Chr9 28368865 28371171 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1989 1 272 ZF-HD Transcription Factor Family AT1G14440 49.175 5.54e-75 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Apr9g1989 ZF-HD_dimer 1.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1989 - - gmx:100805652 410.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1989 9 28368865 28371171 Apr9g1989 9 28368865 28371171 ECH