Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1981 ATGGCTTTCACTGCTCCAAATCACAAATCTGGCGGAATTCATGCAGGGGCAATTAATGATGATTTATACAAGGAATTGTGGCATGCCTGTGCTGGTCCCCTTGTCACTCTTCCTCATGAAGGGGAGCGAGTTTATTACTTTCCACAAGGTCACATGGAACAGCTTGAGGCATCTATGTATGAGGGATTAGAGCAGCAGATGCCTTCCTTCAATCTACCTTCTAAAATATTATGTAAAGTGGTCAATGTTCATCTTCGGGCTGAACCTGAAACAGATGAAGTATATGCACAGATAACACTGCATCCTGAAGCAGATCAAAGCGAGGTGACAAGCCCTGATGACCCTCTTCCTGAATCTCCAAGGGTCAAGGTCCATTCATTTTGCAAGACACTCACTGCTTCTGACACCAGTACCCATGGAGGTTTCTCTGTTCTTCGAAGACATGCAGACGATTGTCTGCCTCCACTGGATATGTCTCAGGCTCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATTTACATGGGAATGAATGGCATTTTAGACATATTTTTCGTGGACAACCCAGGCGCCACTTACTTACCACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAATTAGTGGCTGGTGATGCCTTTATATTCTTAAGGGGTGAAAGTGGAGAGCTGCGAGTTGGGGTTAGGAGGCTTATGAGACAGCAAAGCAATGTGCCTTCTTCTGTTATATCTAGTCACAGTATGCACCTCGGTGTTCTGGCCACTGCATCTCATGCCATTAACACTGGAACACTGTTTTCTGTATTTTACAAGCCCAGAACAAGCCGATCAGAGTTTATTGTAAGTGTCAACAAGTATCTGGAAGCTCAGAGTCATAAACTCTCTGTTGGGATGAGGTTCAAAATGAGATTTGAGGGTGATGAAGTTCCTGAAAGAAGGTTCAGTGGCACAATTGTGGGTGTTGGAGATAATAAATCATTGGTCTGGCCTGATTCTGAGTGGCGATCATTAAGAGTGCAATGGGATGAACCATCATCAATTCTGCGTCCTGATAGAGTTTCTTCATGGGAATTGGAGCCACTTGCGTCTACCACTCCTGCAAACTCTCAGCCAACCCAAAGAAACAAGAGGGCACGACCTATCATTCTACCTTCTACAATGTCTGATTCTTCTATGCAAGGCATATGGAAATCACCAGTTGAATCTACACCTTTCTCTTATTGTGACCCCCAACATGGGCGTGGCCTCTACCCATCACCAAAGTTCAATTCTTCTGCTACTAACTTTCTTGGCTTTAGTGGGAATGGCTCTGTGGGACCTCCTTCCAACAAATCAATATATTGGTCTAATAGGGTAGAAAATTCTATGGAATCTATAGCCCTTAAAGAAGCTGGAGAGAAGAGACAAGGCACTGTAAATGGCTGTAGACTCTTTGGGATTCAGCTAAGTGAGAATTCTAATGCTGAAGGAAGTTTACAAACAGTTACTTTGTCGGGAAGGGTGGTTGATGATAGGTCTGTTCCATCTTTAGATGCTGAGTCTGATCAGCATTCTGAACCATCAAATGCCAATCGATCTGATATTCCAACTGTAAGTTGTGATGCTGAAAAATCATGCCTGCAGTCTCCCCAGGAGTCACAAAGCAAGCAAATAAGGAGCTGTACAAAGGTTCACATGCAAGGAATGGCTGTTGGGAGGGCTGTGGATTTAACACGATTTGATGGATATGAGGATCTACTTCGGAGATTGGAAGAGATGTTTGACATCAAGTCTGAGCTCTGTGGGTCCCTAAAAAAATGGCAGGTTGTCTACACTGATAATGAAGATGATATGATGATGGTTGGAGATGATCCATGGCATGAGTTCTGTACTGTTGTGAGGAAAATTTTCATCTACACTTCAGAGGAGGTGAAGAAGCTTTCGCCCAAAATAGGACTCCCAATTAATGAAAAAGTTAAACCAGGTAAACTAGATTCTGAAGCAATAGTGAATCCCGAAGACCAGTCGTCTACTGTGGGGCCTGGTTGCTAG 2028 0.4389 MAFTAPNHKSGGIHAGAINDDLYKELWHACAGPLVTLPHEGERVYYFPQGHMEQLEASMYEGLEQQMPSFNLPSKILCKVVNVHLRAEPETDEVYAQITLHPEADQSEVTSPDDPLPESPRVKVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQAQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGESGELRVGVRRLMRQQSNVPSSVISSHSMHLGVLATASHAINTGTLFSVFYKPRTSRSEFIVSVNKYLEAQSHKLSVGMRFKMRFEGDEVPERRFSGTIVGVGDNKSLVWPDSEWRSLRVQWDEPSSILRPDRVSSWELEPLASTTPANSQPTQRNKRARPIILPSTMSDSSMQGIWKSPVESTPFSYCDPQHGRGLYPSPKFNSSATNFLGFSGNGSVGPPSNKSIYWSNRVENSMESIALKEAGEKRQGTVNGCRLFGIQLSENSNAEGSLQTVTLSGRVVDDRSVPSLDAESDQHSEPSNANRSDIPTVSCDAEKSCLQSPQESQSKQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLRRLEEMFDIKSELCGSLKKWQVVYTDNEDDMMMVGDDPWHEFCTVVRKIFIYTSEEVKKLSPKIGLPINEKVKPGKLDSEAIVNPEDQSSTVGPGC* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1981 675 MobiDBLite consensus disorder prediction 656 675 - -
Apr9g1981 675 SUPERFAMILY CAD & PB1 domains 553 628 - -
Apr9g1981 675 MobiDBLite consensus disorder prediction 512 527 - -
Apr9g1981 675 ProSiteProfiles PB1 domain profile. 551 644 IPR000270 GO:0005515
Apr9g1981 675 Gene3D - 292 365 - -
Apr9g1981 675 ProSiteProfiles B3 DNA-binding domain profile. 127 231 IPR003340 GO:0003677
Apr9g1981 675 CDD B3_DNA 125 229 IPR003340 GO:0003677
Apr9g1981 675 MobiDBLite consensus disorder prediction 358 378 - -
Apr9g1981 675 SUPERFAMILY DNA-binding pseudobarrel domain 123 258 IPR015300 -
Apr9g1981 675 MobiDBLite consensus disorder prediction 507 527 - -
Apr9g1981 675 Gene3D - 124 231 IPR015300 -
Apr9g1981 675 Pfam Auxin response factor 255 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Apr9g1981 675 Gene3D - 546 640 - -
Apr9g1981 675 SMART B3_2 127 231 IPR003340 GO:0003677
Apr9g1981 675 MobiDBLite consensus disorder prediction 358 375 - -
Apr9g1981 675 PANTHER AUXIN RESPONSE FACTOR 9 9 654 - -
Apr9g1981 675 Pfam AUX/IAA family 543 641 IPR033389 -
Apr9g1981 675 Pfam B3 DNA binding domain 127 229 IPR003340 GO:0003677
Apr9g1981 675 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 654 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1981 Apr-Chr9 28288929 28299993 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1981 3 672 B3 DNA Binding Superfamily AT1G59750 69.037 0.0 903
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Apr9g1981 B3 7.1e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1981 K14486 - gmx:100815450 1238.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1981 9 28288929 28299993 Apr9g1981 9 28288929 28299993 ECH