Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1964 ATGGATAACGAGGTGTTAGAATTTGATATTGGGCTGGGTGGAGGCGAGGGAGAATATGAAGATGATGGAGGGGACATTGAGCACCCTATCGACGAGGAGGAATTGGCCGATAGCAGTGGTGGCTGCGGCGGCGGCGGCGGCGGTGGTGTAGCTACCACTGGTGGTGGCGGTGAAATATATTTTCCTGATGGGGACCTCTTAGATCTTGAACCTTACGAGGGCATGGAATTCGAGTCTGAGGAGGCTGCCAAGGCCTTCTATAATTCCTATGCTCGTCGTGTTGGGTTTAGTACTCGTGTGAGCTCATCCCGTCGTTCGAGGCGCGATGGTGCTATTATACAGAGGCAGTTTGTTTGCGCAAAGGAGGGGTTCCGCAACTTGAATGAGAAACGCACCAAGGATAGAGAGATCAAGCGCCCACGAACCATTACCAGAGTGGGATGTAAAGCGTCTTTGTCTGTCAAAATGCAAGATTCTGGCAAGTGGGTCGTGTCTGGATTTGTTAGAGAACATAATCATGAACTGGTTCCACCAGACCAGGTGCATTGCCTTCGCTCTCACAGGCAAATATCAGGAGCTGCTAAGATGCTGATTGATACTTTACAGGCAGCCGGGATGGGTCCTCGTAGAATTATGTCAGCACTGATTAAAGAGTATGGTGGGATTAGCAAAGTCGGGTTTACAGAGGTGGACTGTAGGAATTACATGAGGAACAATAGACAGAGAAGTTTAGAAGGGGACATTCAACTTGTTCTGGATTATTTGAGACAAATGCATGCTGAAAACCCTAATTTCTTCTATGCTGTGCAAGGGGATGAGGATCAGTCCATAAACAATGTTTTCTGGGCTGATCCCAAAGCAAGGATGAATTATACATTTTTTGGTGACACTGTAACTTTTGACACTACATACCGATCTAACAGGTATCGGTTACCATTCGCTCCCTTTACTGGTGTAAACCATCATGGGCAACCTGTTCTCTTTGGTTGTGCTTTCCTAATTAATGAGTCTGAAGCATCATTTGTGTGGCTTTTCAAGACATGGCTTACGGCAATGTCTGGACGCCCACCAGTGTCGATAACAACTGATCATGATTCTGTAATTCGATCAGCTATAATACAAGTCTTCCCTGAGACCCGCCACCGCTTCTGCAAGTGGCACATCTTTAAAAAATGCCAGGAGAAGTTATCTCATATTTTCCTCAAATATCCAAATTTTGAAGCTGAATTTCACAAATGTGTTAACTTGACTGAGTCAATTGAGGAATTTGAGTCTTGCTGGTCAGCACTTGTAGAAAAATATGATCTCAGGGATCATGAATGGCTTCAAGCAATATATTCTGCTTGTCGGCAGTGGGTACCTGTATATTTGCGAGACACATTCTTTGCAGAAATGTCCATCACTCAGCGAAGTGATAGTATGAACTCTTACTTTGATGGGTATATAAATGCCTCAACCAATTTAAATCAGTTTTTTAAGCTTTATGAGAAAGCACTTGAAAGCCGCAATGAGAAAGAAGTGAGAGCAGATTATGACACAATGAATACTTTGCCAGTATTGAGGACCCCATCTCCAATGGAGAAGCAAGCATCTGAACTTTACACAAGAAAAATTTTTGTGAGGTTCCAGGAGGAGTTAGTTGGAACACTAACATTCATGGCATCCAAAGCTGATGATGATGGGGAGGTCATTACATATCATGTAGCTAAATTTGGAGAGGAGCATAAAGGATACTGTGTTAAATTCAATGTTTTAGAGATGAAAGCAAGTTGTAGTTGCCAAATGTTTGAGTTTTCAGGCCTTCTTTGCAGACATGTTTTGGCAGTCTTTAGAGTTACCAACGTGCTTACCCTCCCATCTCATTATATATTGAAACGTTGGACAAGAAATGCCAAGAGCAATGTAATATTAGAAGAACATTCTTGTGATGTATATACTTACTATTTGGAATCTCATACTGTTAGATATAACACCCTCCGACATGAGGCCTTTAAATTTGTTGATGAAGGTGCACAGTCCTCTGAAACTTATGATACTGCAATGGATGCTTTACAAGAAGCAGCAAAAAGAGTTGCTCAGGCAGTGCAAAATGAGGGAAGAATTCCAATCAGCAATGGAAAGGTAAGGAGTCACTTACTGAATGATGAAAGTCAAGCTAATTACACAAGTGGATGCCAGGAAGAAAGCTTGAGCCAGCATATGCCTAAGGGTAGAAAGGAATAA 2223 0.4274 MDNEVLEFDIGLGGGEGEYEDDGGDIEHPIDEEELADSSGGCGGGGGGGVATTGGGGEIYFPDGDLLDLEPYEGMEFESEEAAKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRTKDREIKRPRTITRVGCKASLSVKMQDSGKWVVSGFVREHNHELVPPDQVHCLRSHRQISGAAKMLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRQRSLEGDIQLVLDYLRQMHAENPNFFYAVQGDEDQSINNVFWADPKARMNYTFFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPVLFGCAFLINESEASFVWLFKTWLTAMSGRPPVSITTDHDSVIRSAIIQVFPETRHRFCKWHIFKKCQEKLSHIFLKYPNFEAEFHKCVNLTESIEEFESCWSALVEKYDLRDHEWLQAIYSACRQWVPVYLRDTFFAEMSITQRSDSMNSYFDGYINASTNLNQFFKLYEKALESRNEKEVRADYDTMNTLPVLRTPSPMEKQASELYTRKIFVRFQEELVGTLTFMASKADDDGEVITYHVAKFGEEHKGYCVKFNVLEMKASCSCQMFEFSGLLCRHVLAVFRVTNVLTLPSHYILKRWTRNAKSNVILEEHSCDVYTYYLESHTVRYNTLRHEAFKFVDEGAQSSETYDTAMDALQEAAKRVAQAVQNEGRIPISNGKVRSHLLNDESQANYTSGCQEESLSQHMPKGRKE* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1964 740 Pfam MULE transposase domain 298 391 IPR018289 -
Apr9g1964 740 Pfam FAR1 DNA-binding domain 86 177 IPR004330 -
Apr9g1964 740 SMART 26again6 589 616 IPR006564 GO:0008270
Apr9g1964 740 Coils Coil 677 697 - -
Apr9g1964 740 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 49 709 - -
Apr9g1964 740 ProSiteProfiles Zinc finger SWIM-type profile. 578 614 IPR007527 GO:0008270
Apr9g1964 740 MobiDBLite consensus disorder prediction 14 32 - -
Apr9g1964 740 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 49 709 IPR031052 GO:0006355
Apr9g1964 740 MobiDBLite consensus disorder prediction 1 55 - -
Apr9g1964 740 MobiDBLite consensus disorder prediction 717 740 - -
Apr9g1964 740 Pfam SWIM zinc finger 566 612 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1964 Apr-Chr9 28025444 28038904 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Apr9g1964 MULE 1e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1964 - - gmx:100793442 1332.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1964 9 28025444 28038904 Apr9g1964 9 28025444 28038904 ECH