Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1961 ATGGGCAACACATGCCGTGGATCTTTGAAAGGGAAATATATTCAGGGCTTCAGCCAGCCCGAAGACCATTCCAAGCGCAACACTCATTCTGATCGCCCTGACTCCGAACCCCAACCAACCAAACAACATCCCAATTCTGCTGAAAACATTAACAACGACTACAACAACAACAACAACAATAACAACAATCTACCCTTCAACTCCAGGAAAGACGCCATCATGCGCCGAGGCCTCGATAGCCAAGCGTATTATGTCTTGGGCCATAAGACTCCCAACATTCGTGATCTATACACTCTTGGCCGTAAATTAGGACAGGGACAATTTGGCACCACTTATTTATGCACCGAGAATTCTACCTCCATTGAGTATGCATGCAAATCCATCTCCAAAAGGAAGTTGATTTCCAAGGAGGACGTGGAGGACGTTAGGCGGGAAATTCAGATAATGCATCATTTAGCTGGTCACAAGAACATCGTCACCATCAAGGGTGCTTATGAGGATCCACTCTATGTTCATATTGTCATGGAGCTTTGTTCTGGCGGTGAGTTGTTTGATCGCATCATCCAGAGGGGCCACTATACGGAGCGGAAGGCTGCAGAATTGACCAAAATTATTGTTGGGGTTGTCGAGGCATGTCATTCCCTTGGCGTTATGCATAGAGATCTCAAGCCTGAAAACTTTCTGTTGGTCAATAAAGATGATGATTTCTCTCTTAAAGCAATTGACTTTGGCCTCTCTGTTTTCTTCAAACCAGGTCAAGTTTTCACTGATGTAGTTGGCAGTCCATACTATGTTGCTCCTGAGGTTCTCCTCAAGCATTATGGACCTGAAGCAGATGTGTGGACAGCGGGTGTCATACTGTACATATTGCTTAGTGGTGTGCCACCATTTTGGGCAGAAACCCAGCAGGGTATATTTGACGCTGTATTGAAAGGACATATAGATTTTGACTCCGATCCATGGCCTCTAATATCAGATAGCGCAAAAGATCTGATTAGAAAGATGTTATGCTGTCGGCCTTCAGAACGACTGACTGCTCATCAAGTGTTATGTCATCCTTGGATATGTGAAAATGGAGTTGCACCTGACAGAGCACTTGACCCTGCTGTTCTTTCTCGCCTTAAACAGTTTTCTGCAATGAATAAGCTAAAGAAGATGGCTTTGCGGGTAATTGCCGAAAGTCTCTCAGAAGAGGAGATTGCTGGTTTAAGAGAAATGTTTCAGGCCATGGATACTGATAACAGTGGTGCAATCACTTTTGATGAACTGAAAGCTGGTCTAAGAAGATATGGGTCTACCCTTAAGGACACAGAAATACGCGATCTTATGGAAGCGGCTGATGTGGACAAAAGTGGAACCATAGATTATGGGGAGTTTATAGCTGCAACAGTTCATCTCAACAAACTAGAGCGTGAAGAACATCTTATTGCAGCATTCCAATATTTTGACAAAGATGGTAGCGGTTATATTACAGTTGATGAACTTCAACAAGCTTGTGCAGAACATAACATGACAGATGTTTTTCTTGAAGATATTATAAGGGAAGTTGACCAAGATAATGATGGAAGGATTGATTATGGTGAATTTGCTGCCATGATGCAAAAAGGCAACCCTGGAATTGGTAGGAGGACCATGCGCAACAGTCTGAATTTGAGCATGAGAGATGCATCAAGTGCTCAATAG 1683 0.4343 MGNTCRGSLKGKYIQGFSQPEDHSKRNTHSDRPDSEPQPTKQHPNSAENINNDYNNNNNNNNNLPFNSRKDAIMRRGLDSQAYYVLGHKTPNIRDLYTLGRKLGQGQFGTTYLCTENSTSIEYACKSISKRKLISKEDVEDVRREIQIMHHLAGHKNIVTIKGAYEDPLYVHIVMELCSGGELFDRIIQRGHYTERKAAELTKIIVGVVEACHSLGVMHRDLKPENFLLVNKDDDFSLKAIDFGLSVFFKPGQVFTDVVGSPYYVAPEVLLKHYGPEADVWTAGVILYILLSGVPPFWAETQQGIFDAVLKGHIDFDSDPWPLISDSAKDLIRKMLCCRPSERLTAHQVLCHPWICENGVAPDRALDPAVLSRLKQFSAMNKLKKMALRVIAESLSEEEIAGLREMFQAMDTDNSGAITFDELKAGLRRYGSTLKDTEIRDLMEAADVDKSGTIDYGEFIAATVHLNKLEREEHLIAAFQYFDKDGSGYITVDELQQACAEHNMTDVFLEDIIREVDQDNDGRIDYGEFAAMMQKGNPGIGRRTMRNSLNLSMRDASSAQ* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1961 560 SUPERFAMILY Protein kinase-like (PK-like) 78 379 IPR011009 -
Apr9g1961 560 ProSitePatterns EF-hand calcium-binding domain. 447 459 IPR018247 -
Apr9g1961 560 SMART efh_1 474 502 IPR002048 GO:0005509
Apr9g1961 560 SMART efh_1 402 430 IPR002048 GO:0005509
Apr9g1961 560 SMART efh_1 438 466 IPR002048 GO:0005509
Apr9g1961 560 SMART efh_1 508 536 IPR002048 GO:0005509
Apr9g1961 560 Gene3D Transferase(Phosphotransferase) domain 1 183 364 - -
Apr9g1961 560 SMART serkin_6 97 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g1961 560 ProSitePatterns Protein kinases ATP-binding region signature. 103 126 IPR017441 GO:0005524
Apr9g1961 560 MobiDBLite consensus disorder prediction 39 68 - -
Apr9g1961 560 ProSiteProfiles EF-hand calcium-binding domain profile. 509 539 IPR002048 GO:0005509
Apr9g1961 560 CDD STKc_CAMK 97 354 - -
Apr9g1961 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Apr9g1961 560 ProSitePatterns EF-hand calcium-binding domain. 483 495 IPR018247 -
Apr9g1961 560 ProSiteProfiles EF-hand calcium-binding domain profile. 398 433 IPR002048 GO:0005509
Apr9g1961 560 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 4 45 545 - -
Apr9g1961 560 MobiDBLite consensus disorder prediction 1 68 - -
Apr9g1961 560 ProSiteProfiles EF-hand calcium-binding domain profile. 434 469 IPR002048 GO:0005509
Apr9g1961 560 ProSiteProfiles EF-hand calcium-binding domain profile. 470 505 IPR002048 GO:0005509
Apr9g1961 560 MobiDBLite consensus disorder prediction 22 38 - -
Apr9g1961 560 ProSiteProfiles Protein kinase domain profile. 97 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g1961 560 Pfam Protein kinase domain 97 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g1961 560 ProSitePatterns EF-hand calcium-binding domain. 517 529 IPR018247 -
Apr9g1961 560 Gene3D Phosphorylase Kinase; domain 1 99 182 - -
Apr9g1961 560 Gene3D - 365 536 - -
Apr9g1961 560 PANTHER SERINE/THREONINE-PROTEIN KINASE 45 545 - -
Apr9g1961 560 ProSitePatterns EF-hand calcium-binding domain. 411 423 IPR018247 -
Apr9g1961 560 SUPERFAMILY EF-hand 379 536 IPR011992 -
Apr9g1961 560 Pfam EF-hand domain pair 403 463 IPR002048 GO:0005509
Apr9g1961 560 Pfam EF-hand domain pair 473 534 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1961 Apr-Chr9 27997941 28006858 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1961 1 556 EF-hand Containing Proteins AT2G17290 82.914 0.0 953
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Apr9g1961 Pkinase 8.4e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1961 K13412 - gmx:100778173 1036.56