Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1959 ATGCAGCTTCCCTGTCATTATTATCATAGGTTCTGGTTGAGTCTTCTATCCCTTGCATTAACATTGACCCTGTTGCATGGAGCATCAAAAGGAGCTTCCAGTTCCAGCCATGAGGTGGTCAAAATCGGTGCCATATTCACGTTAAAAACTATAAACGGACAAGTTTCCAAAATTGCCATCGAAGCTGCTGAGAAAGACGTCAATTCCGATCCTCGCATCCTCGGGGGACGCGAATTGTCCATAACCATCCACGATTCCAACTTCAGCGGTTTTCTTGGCTTTATTGGGGCCCTCAAGTTCTTGATGACTGACACTGTGGCTATAATTGGTCCACAAACCTCAGTGATGGCTCATGTGCTCTCGCATCTTGCAAACGAGCTCCACGTTCCTCTGCTGTCCTTCACGGCTTTTGATCCCACCCTAACACCTCTTCAGTACCCTTACTTTGTCCGAACAGTCCCCAGCGATGAGTTTCAGATGGCTGCAGTTGCTGACATAATTACTTACTATGGTTGGAGAGAAGTCATAGCAGTATTTAGTGACGATGGTCAGAGTCGAAATGGGATTAGTGTATTGGGAGATAAACTTGCTGATAGACGCTGTAAGTTATCTTACAAAGCAGCACTGCCCCCTGATCCAACCGCCATTCCAGCTGATGTTACTACTGAGTTACTCAAAATTACAACTATGGAAGCTCGAGTCATTGTTCTACACACCTTTCACCACACAGGTCTCTTGGTTTTTGACGTGGCTCAAAAACTGGGCATGATGACCAAAGGCTATGTTTGGATTACTACTTCTTGGTTATCAACTGTTTTAGATTCAACTTCATCACTCCCTTTAAATACTTCTAACTCAATTCAAGGAGTTATTACACTTCGCCCTCACACCCCCCAGTCCAGGAAAAAACAGGCATTTATCTCAAGGTGGAAACTCATAAGTAATGGCTCAATTGGGTTAAATCCGTATGGGCTCTATGCTTATGATTCTGTTTGGATGATTGCTCGTGCACTTCAACTATATTTTCATCACAATGGTACCATTTCATTTTCTAATAATACAAATTTAAGTGGTATGAAGGGAGATAGTCTGGATCTTAGTGCTCTTGGCGTTTTTGATGGAGGGAAACGGTTGCTTGATAACATATTGCGCATTAATATGAGTGGATTGACAGGACCTATCCAATTTGGTTCAGACAGATCCCCTTTACATCCATCATATGACATCCTTAATGCACATGCTAATGGTTGTAGGAGGATTGGGTATTGGTCTAATTATTCTGGTCTCTCCGTAGTAACCCCTGAGAAACTTTACACAAAGCCTGCCAATCGCTCTATTTCAAGCCAGCATCTATACCCTGTCATATGGCCTGGAAACACAACACAAAAGCCTCGTGGATGGGTTTTCCCAAATAATGGGAGGCACCTCAGAATTGGAGTTCCTAACAGAGTTAGTTACCGAGACATGGTCTCACAGATAAATGGCACCAGTTCTGTTCAAGGATATTGCATAGATATATTCCTGGCCGCCATAAAATTGCTTCCATATGCCGTTCAACACAAATTCATTCTGTTTGGAGATGGATATAAGAACCCAAGCTACTTTGATTTTGTGAATATGATAACTTCTGATGTTTTTGATGCTGCCGTGGGTGATATTGCTATTGTCACTGACCGAACAAAGATTGTGGACTTTACTCAACCATTTATAGAGTCGGGGCTAGTTGTTGTTGCTCCAGTGAAAAAATTGAAGTCAAGTGCCTGGGCTTTCTTGCGACCATTTACTCCAGTGATGTGGGGTGTCACTGCATTTTTTTTTCTTGCTGTTGGAACGGTGGTGTGGATTCTTGAACATAGAACAAACGATGAGTTTCGGGGGTCTCCAAAGAAACAGATAGTCACGATTCTTTGGTTTAGTTTCTCAACCATGTTCTTTGCGCACAGAGAAAACACAGTTAGTCCACTTGGTCGTGTTGTGTTGATAATTTGGCTTTTTGTGGTTCTGATAATCAATTCAAGCTACACTGCAAGCTTGACTTCAATTCTCACTGTGCAACAGCTGTCATCACCCATAACAGGAATTGATAGCTTGATATCCAGCCGTGAACCTGTAGGCTTCCAAGTAGGCTCATTTGCTGAAAACTATCTGATCGAGGAACTCAACATCCCCAAACATAGACTTGTTCCACTAGGCTCACCAGAAGAATATGCCGTTGCCCTCGCAAGGGGAACTGTTGCAGCTGTGGTGGATGAACGACCATACATAGAACTCTTCCTGTCAAAACACTGCGAATTCTCCATTAGGGGCCAAGAGTTCACCAAAAGTGGATGGGGATTTGCATTCCCGAGGGACTCTCCTGTAGCAATTGATATGTCAACTGCCATTCTAACTCTATCTGAGAATGGTGAACTTCAGAGGATCCGTGAAAAGTGGCTTTCAGAAAAGGCTTGTGGTTTTCATAGCTCCGGGGATGAGCAACTTCAATTAAATAGCTTCCGAGGCTTGTTTCTAATCTGTGGGGCAACATGTTTCCTGGCGCTTCTTATCTACTTTTCCTCAATGCTACACAAATTCATTAAAAAATCCTCTGAAAAAACCGCTCCTTCTAATCGTTGCAGCTCACCCTCTGCACGCATCCAAACATTTCTAAATTTTGCTGATAAAAAAGAAGACGTATCAGACAGGAAATTGAAAAGAAAGATTGAGGATATTACATCAAATGCTTATTCCAGAGGAAAACCTTTCAGAGCATATCCAAGAGAGTAG 2766 0.4273 MQLPCHYYHRFWLSLLSLALTLTLLHGASKGASSSSHEVVKIGAIFTLKTINGQVSKIAIEAAEKDVNSDPRILGGRELSITIHDSNFSGFLGFIGALKFLMTDTVAIIGPQTSVMAHVLSHLANELHVPLLSFTAFDPTLTPLQYPYFVRTVPSDEFQMAAVADIITYYGWREVIAVFSDDGQSRNGISVLGDKLADRRCKLSYKAALPPDPTAIPADVTTELLKITTMEARVIVLHTFHHTGLLVFDVAQKLGMMTKGYVWITTSWLSTVLDSTSSLPLNTSNSIQGVITLRPHTPQSRKKQAFISRWKLISNGSIGLNPYGLYAYDSVWMIARALQLYFHHNGTISFSNNTNLSGMKGDSLDLSALGVFDGGKRLLDNILRINMSGLTGPIQFGSDRSPLHPSYDILNAHANGCRRIGYWSNYSGLSVVTPEKLYTKPANRSISSQHLYPVIWPGNTTQKPRGWVFPNNGRHLRIGVPNRVSYRDMVSQINGTSSVQGYCIDIFLAAIKLLPYAVQHKFILFGDGYKNPSYFDFVNMITSDVFDAAVGDIAIVTDRTKIVDFTQPFIESGLVVVAPVKKLKSSAWAFLRPFTPVMWGVTAFFFLAVGTVVWILEHRTNDEFRGSPKKQIVTILWFSFSTMFFAHRENTVSPLGRVVLIIWLFVVLIINSSYTASLTSILTVQQLSSPITGIDSLISSREPVGFQVGSFAENYLIEELNIPKHRLVPLGSPEEYAVALARGTVAAVVDERPYIELFLSKHCEFSIRGQEFTKSGWGFAFPRDSPVAIDMSTAILTLSENGELQRIREKWLSEKACGFHSSGDEQLQLNSFRGLFLICGATCFLALLIYFSSMLHKFIKKSSEKTAPSNRCSSPSARIQTFLNFADKKEDVSDRKLKRKIEDITSNAYSRGKPFRAYPRE* 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1959 921 CDD GluR_Plant 476 812 - -
Apr9g1959 921 PIRSF IGluLR_plant 7 914 IPR017103 -
Apr9g1959 921 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 27 900 - -
Apr9g1959 921 Gene3D - 778 811 - -
Apr9g1959 921 SUPERFAMILY Periplasmic binding protein-like II 452 814 - -
Apr9g1959 921 Gene3D - 463 586 - -
Apr9g1959 921 CDD PBP1_GABAb_receptor_plant 41 432 IPR044440 -
Apr9g1959 921 Gene3D - 742 777 - -
Apr9g1959 921 PANTHER GLUTAMATE RECEPTOR 3.6 27 900 - -
Apr9g1959 921 SUPERFAMILY Periplasmic binding protein-like I 35 468 IPR028082 -
Apr9g1959 921 Gene3D - 587 714 - -
Apr9g1959 921 Gene3D - 155 429 - -
Apr9g1959 921 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 53 69 - -
Apr9g1959 921 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 147 166 - -
Apr9g1959 921 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 327 339 - -
Apr9g1959 921 SMART GluR_14 475 814 IPR001320 GO:0015276|GO:0016020
Apr9g1959 921 Pfam Receptor family ligand binding region 58 413 IPR001828 -
Apr9g1959 921 Pfam Bacterial extracellular solute-binding proteins, family 3 533 813 IPR001638 -
Apr9g1959 921 Gene3D - 58 404 - -
Apr9g1959 921 Pfam Ligand-gated ion channel 814 842 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1959 Apr-Chr9 27984515 27988001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1959 15 900 Ion Channels AT2G17260 61.735 0.0 1130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1959 K05387 - qsu:112010597 1305.04