Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1958 ATGGGAATTTGCTGGGCTTCTCCCCCTCACCACCCAACCCCCACTTCAACTCCAACAACCACCGCTACTTTGGGGCAATCGCAGAGCAGCTATACTACCTCTTCTGGAAGTGGGAACAGCTCCATAAATAGCAAGTTCTCGGCGTCAAGCGGCGATGAGCCTTATCCGAATGGCCAGATCTTACCTACCTCTAACTTGAGGATCTTCACTTTTGCCGAGTTGAAGGCTGCGACTAGGAATTTCAGAGTTGATACTGTGCTCGGGGAGGGAGGTTTTGGAAAAGTCTACAAAGGTTGGCTTGAAGATAAGGCCGCACCAAAGAGTGGAAGCGGAACGGTCATTGCCGTCAAAAAGCTCAACTCCGAAAGCTTACAAGGACTGGAGGAGTGGCAGTCAGAAGTAAATTTTCTAGGACGCCTCTCTCATCCTAATCTGGTTAAGCTGTTGGGATACTGTTTGGAGGAAACAGAGCTTCTTCTCGTCTATGAATTCATGCAAAAGGGCAGTTTGGAAAATCATCTATTTGGAAGGGGCGCTGCTGTTCAACCACTTCCTTGGGACATCAGACTTAAGATTGCAATTGGAGCAGCTCGTGGCCTTGCATTCTTGCATATATCCGAGAAAGTAATTTACAGAGACTGTAAGGCTTCCAATATATTGCTTGATGGGTCCTATAATGCAAAGATATCAGACTTTGGCTTGGCAAAACTGGGTCCTTCAGCAAGTCAATCCCATGTGACAACAAGGGTGATGGGCACATACGGTTATGCAGCTCCTGAATACGTGGCCACAGGGCATCTATATGTGAAGAGTGACGTATATGGGTTTGGAGTTGTGTTGGTTGAGATACTAACAGGCCTAAGAGCACTTGATATCAACCGTCCAAGTGGGCAACATAATCTAACAGATTGGGTGAAACCACGCCTGCATGACAGAAGAAAATTGAAGAGCATTATGGATTCTCGGTTGGAAGGAAAATTTCCATCCAAAGCTGCATTTCGTATAGCTCAGGTTGCTTTAAAATGTCTTGCATCTGAGCCCAAACAGCGGCCATCAATGAAGGAAGTTTTGGAGAACTTGGAGCGAATTCAAGCTGCCAATGAGAAAACTGTGGAGCCCAAGTCCCGCTCTACTCATACCCCTCAAGTTCAGCGGGCTGTGCACCATCGTTCTTCTCTTCATCCAAAGCATGACGGTAGTTGGTCTTGA 1209 0.469 MGICWASPPHHPTPTSTPTTTATLGQSQSSYTTSSGSGNSSINSKFSASSGDEPYPNGQILPTSNLRIFTFAELKAATRNFRVDTVLGEGGFGKVYKGWLEDKAAPKSGSGTVIAVKKLNSESLQGLEEWQSEVNFLGRLSHPNLVKLLGYCLEETELLLVYEFMQKGSLENHLFGRGAAVQPLPWDIRLKIAIGAARGLAFLHISEKVIYRDCKASNILLDGSYNAKISDFGLAKLGPSASQSHVTTRVMGTYGYAAPEYVATGHLYVKSDVYGFGVVLVEILTGLRALDINRPSGQHNLTDWVKPRLHDRRKLKSIMDSRLEGKFPSKAAFRIAQVALKCLASEPKQRPSMKEVLENLERIQAANEKTVEPKSRSTHTPQVQRAVHHRSSLHPKHDGSWS* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1958 402 MobiDBLite consensus disorder prediction 1 57 - -
Apr9g1958 402 Gene3D Phosphorylase Kinase; domain 1 65 164 - -
Apr9g1958 402 Pfam Protein tyrosine and serine/threonine kinase 83 360 IPR001245 GO:0004672|GO:0006468
Apr9g1958 402 PANTHER OS01G0588500 PROTEIN-RELATED 17 381 - -
Apr9g1958 402 PANTHER SERINE/THREONINE-PROTEIN KINASE PIX13-RELATED 17 381 - -
Apr9g1958 402 MobiDBLite consensus disorder prediction 364 402 - -
Apr9g1958 402 CDD STKc_IRAK 87 363 - -
Apr9g1958 402 SUPERFAMILY Protein kinase-like (PK-like) 60 361 IPR011009 -
Apr9g1958 402 Gene3D Transferase(Phosphotransferase) domain 1 165 388 - -
Apr9g1958 402 ProSiteProfiles Protein kinase domain profile. 81 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g1958 402 MobiDBLite consensus disorder prediction 16 57 - -
Apr9g1958 402 ProSitePatterns Protein kinases ATP-binding region signature. 87 118 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1958 Apr-Chr9 27965956 27968648 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1958 67 368 Receptor kinase-like Gene Family AT4G02010 50.980 8.36e-102 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Apr9g1958 PK_Tyr_Ser-Thr 7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1958 - - vun:114194495 646.736