Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1955 ATGGAATATGGTGCCTTAGTGCAAAATTGTGCGTTGGCCGAGTGTGGATCAGAGGAAGAACTGATAGAGGAGCTGCTGGTAGAAGGTTGCTGGGTGGAAACGAGTGGTGTTGGGAGCGAAGAAACTGAGGTTGGGAAGAGATGGTGGATTGGACCCAGGGCAAATCCTGAGCCATCATCATCTGTGAAAGAGAGATTAGTTGTTGCTGTTGAGTACTTGAAAGAATACACAAAGAACGCCAATGTGCTGATTCAGATATGGGTGCCACTACGGAGAGGACTTGGCCTTGACTTCCACACAAATCCAGATGATTCAGTTTCTCTTGCTTTTCCCATTAACCCAAACCCAAACACAAACGTAAACCTTCGCTTCTTTAGATGCCATGAGTACCCCCGCCTTCATTATGATCTCCCTGGATCTTTGTCCCTTCCTGTCTTCGAAAGAGGCACTGCCACATGCCTCGGTGTTCTTCAGATCCTTATCACAAACCAAACCATCATCAACTACCGCCCACAGCTTGATCAGACTAATGTCTGCAATGCTTTCGAGCGTGTCAATGATTTGCAGGCTGTTGATTTTAGGAGTTGCGAGAACTTCATTCCACCTGCTGTAAAGGTGTTTGAGGAGTTGTATGAAGCGGCAGTGAATGAAATCGTAGAGGTTTTGACGTCAGTGTGCAAGACGCACAATCTGCCTTTAGGTCTGACATGGGCACCTTGCATCCAACAAGGGAAGTGTGGGTATGGGCATTCAACGGAGAATCATGTGTCGACAGTGGATTCAGCGTGTTTTGTGGGAGATGTGGGCATGTTGGGATTCCAGGAAGCATGTTCTGAGTATCACCTTTTACGAGGACAAGGAATTGTTGGGACAGCCTTCACAACAACGAAGCCTTGTTTTGCTATAGACATAACAGCCTTTAGCAAAGCCGAATATCCTCTGGCTCACCATGCAAAGATGTTTGGCTTGCATGCTGCTGTGGCTATTCCTCTGAGGAGCCTTTACACTGGATCCGCTGATTTTGTCTTGGAGTTTTTCCTCCCAAAGGATTGCCACGACAGCCAAGAGCAGAAGCACATGCTCAACTCATTATCCATGCTCCTTCAGCAAGCATGCAGAAGCTTGCATGTTGTCATGGAGGATGAGTTCACGTTGCCACCACAGCCACACGACAATAAGGAGGAAATATCTAACAGATTATTTGCGTCGCAGTCTCAGTCTCAATCGCAGGCAGAACCGTGTGGAAAAGAATCGTCGTGGATTGCACACATGATGGAGGCGCAGCAGAAAGGGAAAGGGGTGTGTGTGTCGTTGGAATACTTGGAAGAGCCAAAAGAGGAGTTCAAAGTGACGACCAATTGGGACAACAGTAACAGTCATGAGGTGTTTTCAGATTATGGGCAAGTTGAGCAAAGATGTGTAGAGGGTGTTGGGGAAGAATCTCACACGTTCAGTGGACGGCGCGGGGGCAGAAAGTCAGGCGAGAAGAGACGAACAAAGGCAGAGAAGACTATCAGTTTGCCAGTTCTAAGACAATACTTTGCTGGAAGCCTAAAAGATGCGGCAAAGAGCATTGGCGTGTGCCCCACAACTCTGAAAAGGATATGCAGACAGCATGGAATAACGAGGTGGCCATCAAGGAAAATAAAGAAGGTAGGTCACTCTTTAAAGAAACTTCAACTTGTGATCGATTCGGTACAGGGTGCTGAGGGTGCCATTCAGATTGGTTCCTTCTATACCAGTTTTCCTGAGTTGAGCTCTGCCACTGCCGAATCATCCAAGTCCAAGAAAATGTCAATGCAAATGCCAATGCCAATGCCTATGCCTATGCCTATGCCTATGCACGAGCCTGACACCACCTTCTATGGCCATGGAGATAACACCTTAAAATCCCCACCTTCCTCCACCGCTTCCACTATCATCAACACTGCACCAGATGTTCCTGTTACTGATGCATTCCTAAGGAGTGAACCAGACTTGCATGCATCAATCCAAGTCCAACAGGAGGATACAAAACATTTCAACACACCCAACTTGTCTGAAATTGCTTGTGCCTGGAACTCTCGAGCTCTTAGAGTCAAAGCTACTTTTGCGGATGAAAAAATTCGCTTTAGCTTGCAACCAATTTGGGGTTTCGCAGATTTGCAGCTTGAGATAGCAAGACGTTTCAATCTAAGCGATGTCAGCAACATGGTTCTCAAGTATTTGGATGATGATGGGGAGTGGGTCGTTTTGGCCTGTGATGCTGATCTTGAAGAGTGTAAAGATTTGCATAAATCATCTCAGAGCCGCACCATTAGACTCGCCCTATTTCAAGCAAATACGTTCGGCAACAGCAGCCCATCTTAA 2349 0.4683 MEYGALVQNCALAECGSEEELIEELLVEGCWVETSGVGSEETEVGKRWWIGPRANPEPSSSVKERLVVAVEYLKEYTKNANVLIQIWVPLRRGLGLDFHTNPDDSVSLAFPINPNPNTNVNLRFFRCHEYPRLHYDLPGSLSLPVFERGTATCLGVLQILITNQTIINYRPQLDQTNVCNAFERVNDLQAVDFRSCENFIPPAVKVFEELYEAAVNEIVEVLTSVCKTHNLPLGLTWAPCIQQGKCGYGHSTENHVSTVDSACFVGDVGMLGFQEACSEYHLLRGQGIVGTAFTTTKPCFAIDITAFSKAEYPLAHHAKMFGLHAAVAIPLRSLYTGSADFVLEFFLPKDCHDSQEQKHMLNSLSMLLQQACRSLHVVMEDEFTLPPQPHDNKEEISNRLFASQSQSQSQAEPCGKESSWIAHMMEAQQKGKGVCVSLEYLEEPKEEFKVTTNWDNSNSHEVFSDYGQVEQRCVEGVGEESHTFSGRRGGRKSGEKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYTSFPELSSATAESSKSKKMSMQMPMPMPMPMPMPMHEPDTTFYGHGDNTLKSPPSSTASTIINTAPDVPVTDAFLRSEPDLHASIQVQQEDTKHFNTPNLSEIACAWNSRALRVKATFADEKIRFSLQPIWGFADLQLEIARRFNLSDVSNMVLKYLDDDGEWVVLACDADLEECKDLHKSSQSRTIRLALFQANTFGNSSPS* 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1955 782 CDD PB1_NLP 691 772 IPR034891 -
Apr9g1955 782 MobiDBLite consensus disorder prediction 477 500 - -
Apr9g1955 782 SUPERFAMILY CAD & PB1 domains 686 773 - -
Apr9g1955 782 PANTHER PROTEIN NLP8 36 780 IPR045012 GO:0003700
Apr9g1955 782 Gene3D - 687 774 - -
Apr9g1955 782 ProSiteProfiles PB1 domain profile. 690 773 IPR000270 GO:0005515
Apr9g1955 782 Pfam RWP-RK domain 505 552 IPR003035 -
Apr9g1955 782 Pfam PB1 domain 691 772 IPR000270 GO:0005515
Apr9g1955 782 PANTHER PROTEIN NLP2 36 780 - -
Apr9g1955 782 SMART PB1_new 690 773 IPR000270 GO:0005515
Apr9g1955 782 ProSiteProfiles RWP-RK domain profile. 491 572 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1955 Apr-Chr9 27936349 27939238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1955 40 774 NLP Transcription Factor Family AT4G35270 45.204 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Apr9g1955 PB1 9.7e-15 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1955 - - lja:Lj0g3v0358659.1 978.008