Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1954 ATGTCTGATAGTGGAAGTGGATACGGAGAAGCGTCTTCTTCGGTGTGGGGAAAGAAGAGGAAGAAAACCGAGGAATGGAAGGGGAAGAGAACAGAACCATGCGCGTGCACAGAATGCGGAAAGAAGTTCTGGTCATGGAAGGCACTGTTCGGGCACATGAGATGCCACCCCGAGAGGGAGTGGAGAGGGATCAATCCTCCTCCCAATCTCAAACGACAGAGAGGCATCACGGAGGAAGAGCGCGAGGTGGCTCAGTGTTTGCTATTGCTTGCCAATGGGAATGCCAATGCCAATGCCATTGATGATCCTCACTTCGAATGCTCCAACTGCAACAAGGTCTTCGGTTCCCACCACGCTCTCGGAGGCCACCGCGCCAGTCACAAGAACGTCAAGGGTTGTTTTGCCAATGCCGTAACAACCCACGACGACAACAACACCAACACCAACACCAACAACAACAACATGATCATTGGCTTCGGTAATTCCATTTCTGCCCCTCACAAGTGCAGCATATGCCTGAGGGTATTCTCCACCGGACAAGCACTCGGTGGCCACAAGAGGTGTCATTGGGAGAAAGGGGACACTGTCTCTGTCTCACCCAACTCCGTCGACTTGAATTTCCCTCCCCCCGATGATCCCTCTCTCGATCTGAGGTTGGGTCTTTAG 666 0.5285 MSDSGSGYGEASSSVWGKKRKKTEEWKGKRTEPCACTECGKKFWSWKALFGHMRCHPEREWRGINPPPNLKRQRGITEEEREVAQCLLLLANGNANANAIDDPHFECSNCNKVFGSHHALGGHRASHKNVKGCFANAVTTHDDNNTNTNTNNNNMIIGFGNSISAPHKCSICLRVFSTGQALGGHKRCHWEKGDTVSVSPNSVDLNFPPPDDPSLDLRLGL* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1954 221 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 18 211 - -
Apr9g1954 221 SUPERFAMILY beta-beta-alpha zinc fingers 33 127 IPR036236 -
Apr9g1954 221 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 18 211 - -
Apr9g1954 221 SUPERFAMILY beta-beta-alpha zinc fingers 165 192 IPR036236 -
Apr9g1954 221 Gene3D Classic Zinc Finger 103 189 - -
Apr9g1954 221 Pfam C2H2-type zinc finger 104 128 - -
Apr9g1954 221 Pfam C2H2-type zinc finger 167 191 - -
Apr9g1954 221 Pfam C2H2-type zinc finger 36 58 - -
Apr9g1954 221 ProSiteProfiles Zinc finger C2H2 type domain profile. 167 189 IPR013087 -
Apr9g1954 221 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 132 IPR013087 -
Apr9g1954 221 ProSitePatterns Zinc finger C2H2 type domain signature. 169 189 IPR013087 -
Apr9g1954 221 ProSitePatterns Zinc finger C2H2 type domain signature. 107 127 IPR013087 -
Apr9g1954 221 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
Apr9g1954 221 ProSitePatterns Zinc finger C2H2 type domain signature. 34 56 IPR013087 -
Apr9g1954 221 SMART c2h2final6 167 189 IPR013087 -
Apr9g1954 221 SMART c2h2final6 105 127 IPR013087 -
Apr9g1954 221 SMART c2h2final6 34 56 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1954 Apr-Chr9 27925917 27926582 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1954 21 221 C2H2 Transcription Factor Family AT4G35280 52.212 4.31e-69 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr9g1954 zf-C2H2_6 8.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1954 - - gmx:100792631 232.261