Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1948 ATGGAAAAGAGAGGTGATGGCGCCGATGCTGATCTTCGAATTGATACCGATAATGCGCCAGATCAGACATGTACTGGAGATGATAAAGGTGACAATGCCTTCTTGATTCCGCAGTCAAGACGACCTAATCTCTCCTCACTGCAAATACCAGCATGGTCATTAGATATTGCATTATCTACTTTTGCGAAGACGGATGGTCCTTCAGTTTCACTATCAAGTCCTGGTTCCGCAAGAGGACTCCCTCCAAGGCCAAATTCAGCCAAAGTCAGGTCTTCTATGAAAAGCTTACTTCCTCAGAGGAGCTTCAAGACAAGCACCTGTTCCCAGGATACTGAAAGGACAGGTCTCATAGTTCCTGATACTCCCCCATCAGAAGCTCCTTTGGATAAGCCTTCCACTTCAAGGTCTAAATCTCTTGATAACAAAGTCATCTTCTCCCCATCGAAAAAAGTGGCTCATTCATTACCAGTTACTCCAATTGCAACTTCAGGTGCAAATAGTGTACATGGAAGACATCTAGGGTGTGATTCTGGTTTAAGTACAATGGAAGTTCAACAGCATATGACTCGATCACTTTCAGTCCCAGTTAATTGCAAAGCCACTAATTTAAGGGGTGCAAATTCTAGGAGCATGATTCGTGTAATTTCTGCAACACCACATCTTGAAACTGCTGGTGGAGCCTCAACTGGTGGTGCTTTGGTTCCAGAGATTGCCATTGAAGATGCTACTGAGGATATTCCAGAGGAAGAAGCAGTTTGTAGGATTTGTCTGGTGGAGCTTGGGGAAGGAGGGAATACTCTTCTGATGGAATGCAGTTGTAAAGGTGATCTTGCACTGGCTCACCAAGACTGTGCAGTAAAGTGGTTTACTATTAAAGGAAACAGGACCTGTGATGTCTGCAAGCAGGATGTCCAAAACCTCCCAGTAACACTGTTGAAAATTTATAACCCTCAAACTGCTGCCAGGCAGATATCAAATGTGACACAACAAGCAGATATAACTTATTGCAGGATCTGGCATGATGTACCAGTTCTTATCTTGGTCAGCATGCTTGCTTACTTTTGCTTTCTAGAGCAACTACTGGTTTCAGATTTGGGCCCCCGTGCTCTTGCCATTTCACTACCATTCTCCTGTGTTTTAGGTTTCCTTTCGTCTATGATTGCATCAACCATGGTGATCAGGAGTTACGTATGGGCTTATGCTTGCTTCCAGTTTGCAATTCTTATCCTGTTTGCTCATGTATTTTATACTATTCTCAATGTTAATGCAATTCTCTCCATTCTCCTTTCCTCATTCACTGGATTTGGGATTGCAATCAGTATGAATTCTCTCGTTATGGAATTTATTAGATGGAGAACAAGTAGGCAGATTCGATCCTCTGTTGAGAATGTTAACAGGACAGAGCAGCAGTACCCGTGA 1419 0.432 MEKRGDGADADLRIDTDNAPDQTCTGDDKGDNAFLIPQSRRPNLSSLQIPAWSLDIALSTFAKTDGPSVSLSSPGSARGLPPRPNSAKVRSSMKSLLPQRSFKTSTCSQDTERTGLIVPDTPPSEAPLDKPSTSRSKSLDNKVIFSPSKKVAHSLPVTPIATSGANSVHGRHLGCDSGLSTMEVQQHMTRSLSVPVNCKATNLRGANSRSMIRVISATPHLETAGGASTGGALVPEIAIEDATEDIPEEEAVCRICLVELGEGGNTLLMECSCKGDLALAHQDCAVKWFTIKGNRTCDVCKQDVQNLPVTLLKIYNPQTAARQISNVTQQADITYCRIWHDVPVLILVSMLAYFCFLEQLLVSDLGPRALAISLPFSCVLGFLSSMIASTMVIRSYVWAYACFQFAILILFAHVFYTILNVNAILSILLSSFTGFGIAISMNSLVMEFIRWRTSRQIRSSVENVNRTEQQYP* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1948 472 ProSiteProfiles Zinc finger RING-CH-type profile. 245 307 IPR011016 GO:0008270
Apr9g1948 472 PANTHER OS02G0165000 PROTEIN 22 469 - -
Apr9g1948 472 MobiDBLite consensus disorder prediction 1 42 - -
Apr9g1948 472 MobiDBLite consensus disorder prediction 64 139 - -
Apr9g1948 472 Pfam RING-variant domain 253 300 IPR011016 GO:0008270
Apr9g1948 472 PANTHER OS02G0165000 PROTEIN 22 469 - -
Apr9g1948 472 MobiDBLite consensus disorder prediction 88 115 - -
Apr9g1948 472 MobiDBLite consensus disorder prediction 1 16 - -
Apr9g1948 472 SMART ringv_2 252 301 IPR011016 GO:0008270
Apr9g1948 472 CDD RING_CH-C4HC3_MARCH 253 301 - -
Apr9g1948 472 SUPERFAMILY RING/U-box 249 304 - -
Apr9g1948 472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 308 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1948 Apr-Chr9 27866904 27872100 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1948 236 307 C3H Transcription Factor Family AT2G37950 45.205 2.09e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1948 - - gmx:100789461 753.436