Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1942 ATGGAGATGCAGCAGCTTCTCAGCATGGGCTTCCCCGACGAGTTAGCTGCCCAAGCCTTGGCTGCCACCGGCGGCAAATCCACCGTCAAAGCCACCGAATGGATTCTCACTCACAAGTCCAACACCAACACCAACTCCTTTCAGCCCAAGCTCGACAGGTTCTTCCATTCCCATTCCCATTCCCAATCCCAATCCCAACCCCAAGAAGAAGAAGAAGAACCATCCAAACGCCCTAAGTTGTCTCAATCTCCTCAACAGCAGCACCAGCAGCAACTACAACAACACTGGCCTTCCATCTTCTTCAAGAAACACCCCAACAGCAACAACAATACTCACATTCACGAACCCTTATACGAGCGCCTGCGTCCCAGAACCCTGGACGACGTCGTTGGACAGGACCATCTCCTCTCCCCGAAATCCCTCCTTCACTCCGCAATCCAACGCAGTCGCCTCCCTTCCATCCTCTTGTGGGGTCCACCCGGCACCGGTAAGACAACTATCGCCAAAGCCATTGTCAATTCCGCTACTTCTTCAACCTGTTACCGCTTTGTTTCCTTATCTGCCGTCACTAGCGGCGTTAAAGACGTCAGAGACGCCGTTAACGAAGCCAGAAAACTCAGACTCAAAACCAACCAAACAACCGTTCTCTTCGTCGATGAGGTTCACAGATTCAACAAGTCTCAGCAGGACTCTTTCTTACCCGTCATCGAAGATGGCAGCATTGTCTTCGTTGGAGCCACCACCGAGAACCCTTCTTTCCATTTGATCACTCCCCTCTTGTCTCGCTGCCGCGTTCTTACTCTTAACCCTCTTCAACCCCACCATCTTGCCCTGCTTCTCAACCGGGCCGTCAATGACCCTGACAAAGGCTTGATGCAGAGCGTGGGGTTTCAAGTGGATTTAACAGAGGATGTTGTTGATTTTATAAGCAACAACTGTGACGGGGATGCTCGTGTCGCCTTGAATGCATTGGAGATTGCTGCTGTTACGGCTGCTGCACGGCTACAGCGTGTTAATCTTAGGAACTCTAAGCAAAAGGAAGAAGAAGTTGATCTTCACCCCAACGAGGAATGCAAGGTTGCTGCTCTTGTTACTCTTGATGATGCCAAGGAGGCACTTCAGTGCAAGCACCTTGCTTATGACAAAGCTGGGGAAGAGCATTATAATCTAATCAGTGCACTGCACAAATCCATGAGGGGAAGCGATGCTGATGCTGCCATTTATTGGTTGGCAAGAATGATAGAGGGAGGTGAGGAGCCTCTTTACATTGCACGTAGACTCATAAGGTTTGCAAGTGAGGATGTTGGGTTGGCTGATCCAACGGCTCTTGCTCAGGCTGTTTCCTGCTACCAAGCTTGCCACTTTTTAGGAATGCCAGAATGCAATGTCATTCTCGCACAGTGTGTTGCTTACTTGGCCTTGGCTCCTAAATCTGTCGCTGTTTATCGAGCAATAGAAGCAGCTCAGAAGGCAGTGAAGGAATCGGTTGGACAGAATGAGGGAGTGCCTCTTCATCTGAGGAATGCACCAACCAAATTAATGAAGGATATTGGATATGGGAAGGGATACATTTACCCTCCCGACAACCCTTCCTCAACACAGACCTACTTACCACCATCACTTCAAGGATACAAGTTCCTCGATTGGCCTGACAGGATCCCCTCCGATGGATAA 1674 0.4994 MEMQQLLSMGFPDELAAQALAATGGKSTVKATEWILTHKSNTNTNSFQPKLDRFFHSHSHSQSQSQPQEEEEEPSKRPKLSQSPQQQHQQQLQQHWPSIFFKKHPNSNNNTHIHEPLYERLRPRTLDDVVGQDHLLSPKSLLHSAIQRSRLPSILLWGPPGTGKTTIAKAIVNSATSSTCYRFVSLSAVTSGVKDVRDAVNEARKLRLKTNQTTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRVLTLNPLQPHHLALLLNRAVNDPDKGLMQSVGFQVDLTEDVVDFISNNCDGDARVALNALEIAAVTAAARLQRVNLRNSKQKEEEVDLHPNEECKVAALVTLDDAKEALQCKHLAYDKAGEEHYNLISALHKSMRGSDADAAIYWLARMIEGGEEPLYIARRLIRFASEDVGLADPTALAQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSVAVYRAIEAAQKAVKESVGQNEGVPLHLRNAPTKLMKDIGYGKGYIYPPDNPSSTQTYLPPSLQGYKFLDWPDRIPSDG* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1942 557 Pfam UBA/TS-N domain 4 35 IPR015940 -
Apr9g1942 557 Pfam ATPase family associated with various cellular activities (AAA) 154 265 IPR003959 GO:0005524|GO:0016887
Apr9g1942 557 CDD AAA 130 264 - -
Apr9g1942 557 Gene3D - 271 343 - -
Apr9g1942 557 Gene3D - 478 553 - -
Apr9g1942 557 SUPERFAMILY UBA-like 3 45 IPR009060 GO:0005515
Apr9g1942 557 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 158 177 - -
Apr9g1942 557 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 553 557 - -
Apr9g1942 557 Gene3D - 105 269 IPR027417 -
Apr9g1942 557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 339 IPR027417 -
Apr9g1942 557 Gene3D - 2 40 - -
Apr9g1942 557 MobiDBLite consensus disorder prediction 56 93 - -
Apr9g1942 557 SMART AAA_5 150 271 IPR003593 -
Apr9g1942 557 Pfam MgsA AAA+ ATPase C terminal 400 546 IPR021886 -
Apr9g1942 557 MobiDBLite consensus disorder prediction 79 93 - -
Apr9g1942 557 CDD HLD_clamp_RarA 271 374 - -
Apr9g1942 557 Gene3D - 374 477 - -
Apr9g1942 557 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 38 IPR015940 -
Apr9g1942 557 SUPERFAMILY post-AAA+ oligomerization domain-like 384 550 IPR008921 GO:0003677|GO:0006260
Apr9g1942 557 Pfam AAA C-terminal domain 298 399 IPR032423 -
Apr9g1942 557 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 16 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1942 Apr-Chr9 27841796 27843822 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1942 114 325 Core DNA Replication Machinery Family AT1G63160 27.650 4.44e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1942 K07478 - gmx:100799257 872.463