Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1939 ATGGCTGCACAAGCTTTGGTATCATCATCGTCTCTTACCTTCTCAGCGGAGGCTGCAAGACAAAGTCTTGGAGCAAGATCACTCCAATCTCCTATTGGATTCTCCAAAAAAGGCTCCTTTATTGTTAAGGCAGCTTCCACTCCCCCTGTCAAGCAAGGAGCAGATAGACCTTTGTGGTTTGCATCAAAGCAGAGTCTTTCTTACTTGGATGGCAGTCTTCCCGGTGACTATGGATTTGACCCTCTGGGACTTTCAGACCCAGAAGGAACAGGAGGGTTCATTGAGCCCAGATGGCTAGCATATGGAGAGATCATCAATGGTCGTTATGCAATGTTGGGAGCAGTTGGTGCCATAGCACCTGAAATTCTTGGAAAGCTTGGTCTGATTCCTCCTGAAACAGCACTGCCATGGTTCAAAACGGGTGTGTTTCCACCTGCAGGAACATACAACTACTGGGCGGACCCCTACACACTCTTCGTGTTTGAGTTGGCACTTATGGGATTTGCGGAGCACAGGAGATTCCAAGATTGGGCCAATCCTGGATCAATGGGGAAGCAGTATTTCTTAGGACTAGAGAAAGGTCTTGGAGGTTCTGGTGACCCAGCTTACCCTGGAGGACCTTTCTTTAACCCTCTTGGTTTTGGCAAAGATGAGAAATCCATGAAGGATTTAAAGCTGAAGGAAGTGAAGAATGGAAGGTTGGCTATGTTGGCAATCTTGGGTTACTTTATTCAAGCTATTTTCACAGGTGTTGGGCCATTCCAAAACCTCCTAGACCATCTCGCTGACCCAGTGCACAACAACATCTTGACCAATCTCAACTTCTACTAA 831 0.4693 MAAQALVSSSSLTFSAEAARQSLGARSLQSPIGFSKKGSFIVKAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRYAMLGAVGAIAPEILGKLGLIPPETALPWFKTGVFPPAGTYNYWADPYTLFVFELALMGFAEHRRFQDWANPGSMGKQYFLGLEKGLGGSGDPAYPGGPFFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILGYFIQAIFTGVGPFQNLLDHLADPVHNNILTNLNFY* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1939 276 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 8, CHLOROPLASTIC 1 274 - -
Apr9g1939 276 SUPERFAMILY Chlorophyll a-b binding protein 55 273 - -
Apr9g1939 276 Gene3D Chlorophyll a/b binding protein domain 58 275 - -
Apr9g1939 276 Pfam Chlorophyll A-B binding protein 67 246 IPR022796 -
Apr9g1939 276 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 274 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1939 Apr-Chr9 27831134 27833247 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1939 1 276 Chloroplast and Mitochondria Gene Families AT1G61520 82.246 2.50e-160 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1939 K08909 - gmx:100808379 519.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1939 9 27831134 27833247 Apr9g1939 9 27831134 27833247 ECH