Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1935 ATGGACCAACCCAACAACCACCTTCCCTGCGACGCCGACGGCCAATGCATGCTATGCAAACGCAAACCACCTCCTTCCGAAACTCTCACGTGCTGCACGTGCGCCACCCCCTGGCACCTTCCCTGCCTCCCCTCTCCCCCCCTCTCCCGCTCCTCCGACTCCCACTGGGACTGCCCCGACTGCTCCCTCGCCGGAGGAGACGCCGCCCCTGCCCCCGCCCCCTCTTCTGGCCACATCGTCTCCGCCATCCGCGCCATTCAGTCCGACACCTCCCTCACCGATCAACAGAAAGCCAAAAAGCGACAAGAACTCCTCGCTGGCTCCGTCAACCCTTCATCCGAGAAGAGCAACGTCAGTGGCGTCCTCGACATCTTTGACGGAAGCTTGAACTGCTCCTTCTGCATGCAGTTGCCGGAGAGACCCGTCACTACGCCTTGCGGTCACAACTCCTGCTTGCGATGCTTCGAGAAGTGGATTGGGCAGGGAAAGCGCACCTGCGCCAATTGCCGGAGCCAAATTCCGCCGAAGATGGCGTCTCAACCTCGAATCAACTCTCAGCTCGCCATCGCCATCCGATTGGCCAAGGCGGCCAGGTCAGGCTCCGCTGCCGCCGGACCACCCAAAGTCTACCACTTCCTCCACAACCAGGATCGTCCTGACACCGCTTTCACCACCGAGCGAGCCAAGAAGCCCGGCAAGGCCAACGCCTGCAGTGGGAAGATCTTCGTCACTGTTCCACCTGACCACTTTGGACCCATTCCCGCCGAGAACGATCCCACTCGGAACCGCGGCGTTCTTGTTGGCGACACGTGGGAAGACAGGATGGAGTGTCGGCAGTGGGGTGCTCATCTTCCTCATGTCGCCGGCATTGCTGGCCAGAGTGGCCATGGGGCACAGTCTGTTGCACTTTCCGGTGGTTACATTGATGATGAGGATCACGGCGAGTGGTTCCTTTACACTGGCAGTGGTGGGAGGGATCTTAGCGGCAACAAACGCACCAATAAGGAACAGTCTTTTGATCAAAAGTTTGAGAACATGAACGAGGCCTTGAGAGTTAGCTGCCGAAAGGGTTATCCTGTTCGAGTTGTAAGGTCGCACAAGGAAAAACGTTCTTCATATGCCCCCGAATCTGGAGTGAGATACGATGGAGTCTATAGAATAGAGAAGTGCTGGCGCAAAGATGGAATACACGGTTGCAAGGTTTGCCGGTATCTGTTTGTGAGATGCGACAATGAGCCGGCGCCATGGACAAGTGATGAATGTGGAGACCGCCCACGCCCACTGCCCAAAATTGATGAGTTGAAGGCTGCAATTGATATAACCGAAAGGAAGGGTGCTCCATCCTGGGATTATGATGAGGAAAAGGGCTGCTGGTTGTGGAAGAGACCTCCGCCAGAAAGCAGGAAATCCGTTGACATTGTAAAACCTGAAGATAGGTCAACAGTAAGAGTTAAACGAAAAGCGAAAAATGTGTCCGTGAAAGAAAAACTATTGAAAGAGTTTGGTTGCCAAATCTGTCACAAAGTTTTGGCTTTCCCTCTTACTACACCTTGCGCTCACAATTTTTGCAAAGCCTGTCTGGAGGGTGCCTTTTCTGGCCAAAGTTTCATCAGAAAGAGGGCATGTGAAGGTGGTCGCACTTTACGAGCACAGAAAAACATTATGAGATGCCCATCATGTTCAAATGATATTGCTGACTTTCTTCAGAATCCACAGGTTAACAGAGAAATGATGGGCGTTATAGAATCACTCCAGCGGCAGGCTGAACAGATGGATGATAATTCTGAAGAGTCGAGCGATAAAAATGATGAAAATCTTAAGAATGTGGATGATGGGACAGAAGTTGTTAAAAATAGTGATTCAAGTGAGAAGGTACTGGAGGAAATTAAGGACAATGATCTGAATCAGCCACACACGCGGAGGAAAGGTGCTGGTGGTGCGGTTATGGTGAATATAGATGAACATACTGGGGATGCTGTACACTAG 1986 0.5267 MDQPNNHLPCDADGQCMLCKRKPPPSETLTCCTCATPWHLPCLPSPPLSRSSDSHWDCPDCSLAGGDAAPAPAPSSGHIVSAIRAIQSDTSLTDQQKAKKRQELLAGSVNPSSEKSNVSGVLDIFDGSLNCSFCMQLPERPVTTPCGHNSCLRCFEKWIGQGKRTCANCRSQIPPKMASQPRINSQLAIAIRLAKAARSGSAAAGPPKVYHFLHNQDRPDTAFTTERAKKPGKANACSGKIFVTVPPDHFGPIPAENDPTRNRGVLVGDTWEDRMECRQWGAHLPHVAGIAGQSGHGAQSVALSGGYIDDEDHGEWFLYTGSGGRDLSGNKRTNKEQSFDQKFENMNEALRVSCRKGYPVRVVRSHKEKRSSYAPESGVRYDGVYRIEKCWRKDGIHGCKVCRYLFVRCDNEPAPWTSDECGDRPRPLPKIDELKAAIDITERKGAPSWDYDEEKGCWLWKRPPPESRKSVDIVKPEDRSTVRVKRKAKNVSVKEKLLKEFGCQICHKVLAFPLTTPCAHNFCKACLEGAFSGQSFIRKRACEGGRTLRAQKNIMRCPSCSNDIADFLQNPQVNREMMGVIESLQRQAEQMDDNSEESSDKNDENLKNVDDGTEVVKNSDSSEKVLEEIKDNDLNQPHTRRKGAGGAVMVNIDEHTGDAVH* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1935 661 Pfam Zinc finger, C3HC4 type (RING finger) 129 173 - -
Apr9g1935 661 Gene3D - 231 426 IPR036987 -
Apr9g1935 661 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 6 633 - -
Apr9g1935 661 Pfam SAD/SRA domain 263 411 IPR003105 -
Apr9g1935 661 SMART PHD_3 15 62 IPR001965 -
Apr9g1935 661 SUPERFAMILY RING/U-box 486 535 - -
Apr9g1935 661 CDD RING-HC 131 169 - -
Apr9g1935 661 MobiDBLite consensus disorder prediction 587 661 - -
Apr9g1935 661 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 73 IPR013083 -
Apr9g1935 661 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 488 611 IPR013083 -
Apr9g1935 661 ProSiteProfiles Zinc finger RING-type profile. 503 561 IPR001841 -
Apr9g1935 661 ProSiteProfiles Zinc finger RING-type profile. 131 170 IPR001841 -
Apr9g1935 661 Coils Coil 574 601 - -
Apr9g1935 661 Pfam RING-type zinc-finger 503 544 IPR027370 -
Apr9g1935 661 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 196 IPR013083 -
Apr9g1935 661 SUPERFAMILY RING/U-box 123 177 - -
Apr9g1935 661 MobiDBLite consensus disorder prediction 589 638 - -
Apr9g1935 661 SUPERFAMILY PUA domain-like 234 428 IPR015947 -
Apr9g1935 661 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 6 633 IPR045134 -
Apr9g1935 661 ProSitePatterns Zinc finger PHD-type signature. 16 61 IPR019786 -
Apr9g1935 661 SMART ring_2 131 169 IPR001841 -
Apr9g1935 661 SMART ring_2 503 560 IPR001841 -
Apr9g1935 661 ProSiteProfiles YDG domain profile. 260 408 IPR003105 -
Apr9g1935 661 ProSitePatterns Zinc finger RING-type signature. 518 527 IPR017907 -
Apr9g1935 661 SUPERFAMILY FYVE/PHD zinc finger 5 65 IPR011011 -
Apr9g1935 661 SMART G9a_1 255 412 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1935 Apr-Chr9 27808471 27811831 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1935 6 592 C2H2 Transcription Factor Family AT5G39550 62.375 0.0 753
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1935 K10638 - gmx:100781044 1078.54