Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1904 ATGCAATCAGATAATGGCAAGTTATTTATCGGTGGAATATCATGGGACACAAATGAAGAGCGACTCAGGGAGTATTTCACTACGTATGGGGAGGTTGTGGAAGCAGTGATAATGAAGGATCGGACAACTGGTAGAGCTCGTGGATTTGGTTTTGTTGTTTTCTCAGACCCAGCTGTTGCAGAAATAGTCATAAAAGAGAAACACAACATTGATGGAAGGATGGTCGAGGCAAAGAAAGCTGTTCCTAGGGATGATCAGAACATACTGAATAGAAGCAGTGGCAGCATCCATGGTTCTCCTGGCCCAGGTCGCACTAGAAAGATATTTGTTGGAGGTTTAGCTTCAACAGTGACAGAGAATGATTTCAAGAAGTACTTTGAGCAGTTTGGGATTATAACAGATGTTGTAGTTATGTATGATCACAACACTCAGAGGCCAAGAGGATTTGGATTTATCACTTACGATTCTGAGGAGGCAGTTGACAAGGTCTTACTTAAAACATTTCATGAATTGAATGGTAAAATGGTTGAGGTCAAGCGGGCAGTTCCTAAGGAGTTATCGCCCGGACCAAGCCGTACCCCACTTGGTGGATATAACTATGGTCTTACTAGAGTCAATAGTTTCTTAAATGGCTTCACTCAGGGGTATACTCCTAGTACTGTTGGAGGCTACGGACTTCGAGCAGATGGTAGATTCAGTCCAGTTGCTGGTGGGCGAAGTGGATTTGCTCCATTTGGATCTGGTTATGGGATGAGTATGAATTTTGAGCCTAGTTTGAATGCTGCATTTGGAGGGAATGCAAATTTCAATAACAATCTTAGTTGTGGTCGGGGAGTGAATCCTTATTTTATTGGCAGCTCCAATAGGTTTGGCAGTCCTGTTGGATATGACAGTGGCAATGGAGGAAACAATTCTTTCTTCAGTTCTGTGACTCGAAATTTGTGGGGTAATGGCGGCCTTAACTATGGAACGAATTCTACAAATTCCAATGCATTCATTGGATCAGGGAGTGGGAGTGTTGGAGGAAACACATTTGGCAATACTGGAGTCAACTGGGGTTCTTCAGCAATTTCTGGGCATGGTGGAGGGAACAATATCTCTCAAAGTAGTGGCAACCTTGGATATGGAAGTGGTGACAACAGTTATGGTTTGGGGACTGGAGGGTATGGAAGAAGCACTGGTACCACTTTTGCACCAACATCTTCATACTCTGCATCAAATGGTGGTGTTGATGGGGCTTTTGCTGATTTTTACAATAATAGTTCAGTTTATGGGGACCCCACTTGGCGATCTTCAAATTCTGAGAGGGATGTATCTGGTCCCTTTGGTTATGGACTTGGTGGTGCAGCTTCAGATGTTTCTGCCAAGAGTTCTCCAGGTTATGTTGGTGGTTATACTGTTAATAAGAGGCAGCCAAATAGAGGAATTGCTACATAG 1437 0.4342 MQSDNGKLFIGGISWDTNEERLREYFTTYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAEIVIKEKHNIDGRMVEAKKAVPRDDQNILNRSSGSIHGSPGPGRTRKIFVGGLASTVTENDFKKYFEQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRTPLGGYNYGLTRVNSFLNGFTQGYTPSTVGGYGLRADGRFSPVAGGRSGFAPFGSGYGMSMNFEPSLNAAFGGNANFNNNLSCGRGVNPYFIGSSNRFGSPVGYDSGNGGNNSFFSSVTRNLWGNGGLNYGTNSTNSNAFIGSGSGSVGGNTFGNTGVNWGSSAISGHGGGNNISQSSGNLGYGSGDNSYGLGTGGYGRSTGTTFAPTSSYSASNGGVDGAFADFYNNSSVYGDPTWRSSNSERDVSGPFGYGLGGAASDVSAKSSPGYVGGYTVNKRQPNRGIAT* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1904 478 SMART rrm1_1 7 78 IPR000504 GO:0003723
Apr9g1904 478 SMART rrm1_1 107 179 IPR000504 GO:0003723
Apr9g1904 478 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Apr9g1904 478 SUPERFAMILY RNA-binding domain, RBD 3 104 IPR035979 GO:0003676
Apr9g1904 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Apr9g1904 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Apr9g1904 478 Gene3D - 103 189 IPR012677 -
Apr9g1904 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Apr9g1904 478 Gene3D - 4 88 IPR012677 -
Apr9g1904 478 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 478 - -
Apr9g1904 478 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 1 478 - -
Apr9g1904 478 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Apr9g1904 478 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Apr9g1904 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1904 Apr-Chr9 27642489 27647530 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1904 8 185 Eukaryotic Initiation Factors Gene Family AT2G36660 32.086 6.84e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1904 K14411 - gmx:100795907 843.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1904 9 27642489 27647530 Apr9g1904 9 27642489 27647530 ECH