Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1898 ATGTCTGTGAATCGAAGGCTTTCTGGTTCAAATGGTAGATTGCCATCAAATATGAAGTGTTGGAAGGTAAATGAGCCTCTGCATGGGTCTAATTCCCCTAGGACATGTAGGAGGAAGCCGTTGCTACTTTGGATTTTTGGCTTTGTTGCTATAGGGACTGCTTGGTTCATCTTGAGTTACAATAGTAGGTATTTGATGAGTAAGGAGAAAGAAGCAATTTGCGAAGAGAGGGCACGAATCTTGCTACAGCGTTACAATGTAAGTAGGAAGCAGATTCATGCTTTAGCTTCCTTGCTCTCTGGATCAGATCAGATTTTATCTAACTGTGTCGATGAAAGAAGACTTCAAATGCTGTTAAGCAGTGGCATAGTCAGCACTTCGCAGTTAAAGTGTCCAGAGAATCAGGACTTACAAAAGGAGCATAGATTTGTTGCAGACGCTGTAGAGCCCATGGAACAATGCCCAATTCTGGATGATTATGTCCAGAGAAGGCTTGAATTATCATTCCTATTGAAAAAATATGTATCTTTGGCCTCACACTTTGCGCATGCGTCCGAGTTGGTTAATTATTTGCTCCATGGAAAGAATAGTTTTTTATCATGGGAACTGATAGTCTCTGCAGTTTGGGATCATGTGAGTTCATTTAATTTAATCAAAGGATGCTGGTGGGTCCTTATTGGAATTATAATGTCCTGCAATTTGTCCTGCTTCTGCTTGTGGAGAAGTCAAAAGAGCAAGCTTGTTCAGGGTCATCCATCTGCTCAACAAAAGCGGCTACAACATTTTGTGCAGGGTCCTTCGAAGGGTGCTGGGAGGTGGAGGAAAAAGTTACTAGTTATATTTGTGTCGCTTGGAATAATAGGGTCTGTTTGGTTATTCTGGCACCTAAATGAGGACATTATGCAGAGAAGAGAAGAAATGCTTGCCAATATGTGTGATGAGCGAGCCCGTATGCTGCAAGATCAATTTAACGTAAGCATGAATCATGTTCATGCTCTGGCTATTCTTGTTTCTACTTTTCACCATGGTAAACATCCTTCTGCAATTGACCAGAAAACTTTTGGAGAATATACAGAGAGTACAGCATTTGAGAGACCACTTACTAGTGGTGTTGCTTATGCTTTGAAAGTTCTCCACTCGGATAGGATGCATTTTGAGAAGCAGCATGGGTGGACAATTAAGAAAATGGAAACTGAGAATGAGGCACTAGTCCAAGATTGTATTCCAGAAAATTTGGATCCAGCACCCATTCAAGATGAATATGCACCAGTGATATTTGCTCAAGAAACAGTTTCCCATATTGTATCTATTGACATGATGTCAGGGAAGGAGGACCGTGAGAATATTTTGCGAGCAAGGGCATCTGGAAAGGGTGTTCTGACATCCCCTTTTAAACTACTAAAGTCCAATCACCTGGGCGTTGTACTCACATTTGCTGTCTATGACACTAATCTTCCTTTAGATGCTACACCGGAGCAGCGTATTGAAGCTACTGTGGGGTATCTGGGTGCATCTTATGATGTTCCATCACTGGTGGACAAGCTTCTGCACCAACTTGCCAGCAAGCAAACCATTGTTGTAAATGTTTATGACACCACTAATGGTTCTGGACCTATCACAATGTATGGTACTGATGTTGCTGATACTGGCCTACTACACATAAGCAGCCTAGATTTTGGGGATCCGCTACGAAAACATGAGATGCACTGCAGGTTTGCTTTCGCACTAAAACAATTGCATTGTTTCCAAAGAATTGAAATGCCAGATAAGCGCATTTCCAAATTTCTTTTCCTTTTTCTTTTCTTTTTCAGGTTCAAGCAAAGGCCTCCATTACCTTGGACAGCAATCAATGCATCAGTAGGGGTACTTGTTATTACTTTGCTTCTTGGTCACATTTTTTATGCAGCAATAAATAGAATAGCAAAAGTCGAGGATGACTATCGTCAAATGAGTGAGCTGAAAAGTCGCGCTGAAGCTGCAGATGTGGCAAAATCCCAGTTTCTTGCGACAGTTTCACATGAGATCCGGACTCCAATGAATGGTGTTTTAGGTATGCTGCAAATGTTGATGGACACTGAACTTGATGAAAACCAGATGGATTGTGCCCAAACTGCTCACAAGAGTGGTAAAGATCTTATATCAGTTATAAATGAGGTTCTTGATCAGGCTAAGATTGAGGCGGGAAAGCTTGAACTTGAAGCTGTAGCTTTTGATCCACATGCTATTCTAGATGAAGTTCTATCACTTTTCTCTGAAAAATCTAATGAAAAGGGAATAGAGTTGGCTGTTTATGCTTCCAATCAAGTACCTGAAGTTGTCATTGGTGATCCTAAACGGTTCCGACAAATAATAACTAATCTTGTTGGCAATTCGCTCAAGTTCACTCATGATAAAGGACATGTATTTGTCTCGATTCATCTGGGGATTGAAGTGAAGAACCCACTTCATATTATTGATATAGTGCTGGGAGCAGGCTTAAAATTGGATCAGGACATGTCAGACAGAACTTATGACACATTAAGTGGGTTTCCTGTAGGCAACAGATGGAAAAGTTGGGCAAATTTTAAAAAGTTAAGTAGCATAAATGAACCTGAAATTATTCAACTACTAGTAACCGTTGAGGACACAGGTATAGGAATTCCTACAGATGCACAAAGCCGCATATTTACACCTTTTATGCAGGCTGACAGTTCCACCTCTCGAACATATGGTGGAACTGGAATTGGACTGAGCATTAGTAAATGTCTAGTTGACCTCATGGGAGGAGAAATTGGATTTGTCAGTGAGCCTGGAATTGGAAGTACATTTTCATTTACTGGAATTTTTGGAAAAGGAGAAAGCACATCTCTGGATGCAAAGGGGCAGAAGAGGCCTTTTGGTTCAGAGTTCCAAGGATTGAGAGCATTAGTGGTAGATAGAAGAAAAATTCGAGCTGAGGTCACAAGATATCACCTGCAGAGATTGGGGATGTCTGTGGATGTAACTTGCAGTCTGAATTCTTCTTGTCTATCCAGTATGTTGACACAGTTAGCAATGATTCTTATAGACAAGGATGCTTGGTATAAGGAAAGCAGTATTTTATACACAATCAAGAAACATAGACAGAAGGGCATCAAAGGGGACCCAATACACTCACCAAAGATTTTTCTCCTGGCCACTCACCTTAGCTCCAATGAGTGTGATGAGCTCAAATCAGTTGGTGTCATAGATGATATACTAATGAAGCCTCTTTGGCTCAGTTCTTTGATTCACTGCTACAGAGAATCACTTGGCACTGATAAAAAGCAAATAAATAGGAAGAAAGTATCCAAACTCGGAAATTTATTAATACACAAACAAATTTTGGTGGTTGATGATAATGCAGTGAACAGAAAAGTTGCAGAAGGTGTTCTGCAGAAATATGGGGCAATAGTGACCTCTGTGGAGGGTGGCAAGGCTGCTCTGAAGAAGCTTAAGCTGCCACATAATTTTGATGCTTGTTTCATGGATCTGCAAATGCCAGAAATGGACGGCTTTGAAGTGACAAGGAAAATCCGCAGCCTAGAGAGTGAGGTAAATGAGAAAATTGCATATGGGCAAGCATCAGCTGAGATGTTTGGCAACATCTCTTATTGGCACATTCCTATACTAGCAATGACAGCTGATGTAACTCAAGATTCAAATGAAGAGTGGAGAAAGTGTGGGATGGATGGCTACGTGTCAAAGCCATTCGAAGACGACCAGCTCTATATGACAATGTCACGTTTCTTCAAGTCTGATTCATAG 3765 0.4096 MSVNRRLSGSNGRLPSNMKCWKVNEPLHGSNSPRTCRRKPLLLWIFGFVAIGTAWFILSYNSRYLMSKEKEAICEERARILLQRYNVSRKQIHALASLLSGSDQILSNCVDERRLQMLLSSGIVSTSQLKCPENQDLQKEHRFVADAVEPMEQCPILDDYVQRRLELSFLLKKYVSLASHFAHASELVNYLLHGKNSFLSWELIVSAVWDHVSSFNLIKGCWWVLIGIIMSCNLSCFCLWRSQKSKLVQGHPSAQQKRLQHFVQGPSKGAGRWRKKLLVIFVSLGIIGSVWLFWHLNEDIMQRREEMLANMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAIDQKTFGEYTESTAFERPLTSGVAYALKVLHSDRMHFEKQHGWTIKKMETENEALVQDCIPENLDPAPIQDEYAPVIFAQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYDTNLPLDATPEQRIEATVGYLGASYDVPSLVDKLLHQLASKQTIVVNVYDTTNGSGPITMYGTDVADTGLLHISSLDFGDPLRKHEMHCRFAFALKQLHCFQRIEMPDKRISKFLFLFLFFFRFKQRPPLPWTAINASVGVLVITLLLGHIFYAAINRIAKVEDDYRQMSELKSRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDENQMDCAQTAHKSGKDLISVINEVLDQAKIEAGKLELEAVAFDPHAILDEVLSLFSEKSNEKGIELAVYASNQVPEVVIGDPKRFRQIITNLVGNSLKFTHDKGHVFVSIHLGIEVKNPLHIIDIVLGAGLKLDQDMSDRTYDTLSGFPVGNRWKSWANFKKLSSINEPEIIQLLVTVEDTGIGIPTDAQSRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPGIGSTFSFTGIFGKGESTSLDAKGQKRPFGSEFQGLRALVVDRRKIRAEVTRYHLQRLGMSVDVTCSLNSSCLSSMLTQLAMILIDKDAWYKESSILYTIKKHRQKGIKGDPIHSPKIFLLATHLSSNECDELKSVGVIDDILMKPLWLSSLIHCYRESLGTDKKQINRKKVSKLGNLLIHKQILVVDDNAVNRKVAEGVLQKYGAIVTSVEGGKAALKKLKLPHNFDACFMDLQMPEMDGFEVTRKIRSLESEVNEKIAYGQASAEMFGNISYWHIPILAMTADVTQDSNEEWRKCGMDGYVSKPFEDDQLYMTMSRFFKSDS* 1255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1898 1254 ProSiteProfiles Response regulatory domain profile. 1113 1250 IPR001789 GO:0000160
Apr9g1898 1254 SMART HKATPase_4 775 944 IPR003594 -
Apr9g1898 1254 SMART REC_2 1112 1246 IPR001789 GO:0000160
Apr9g1898 1254 ProSiteProfiles Response regulatory domain profile. 967 1090 IPR001789 GO:0000160
Apr9g1898 1254 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 650 729 IPR036097 GO:0000155|GO:0007165
Apr9g1898 1254 PRINTS Bacterial sensor protein C-terminal signature 869 883 IPR004358 GO:0016310|GO:0016772
Apr9g1898 1254 PRINTS Bacterial sensor protein C-terminal signature 887 897 IPR004358 GO:0016310|GO:0016772
Apr9g1898 1254 PRINTS Bacterial sensor protein C-terminal signature 904 922 IPR004358 GO:0016310|GO:0016772
Apr9g1898 1254 PRINTS Bacterial sensor protein C-terminal signature 928 941 IPR004358 GO:0016310|GO:0016772
Apr9g1898 1254 ProSiteProfiles Histidine kinase domain profile. 670 939 IPR005467 -
Apr9g1898 1254 PANTHER TWO-COMPONENT HISTIDINE KINASE 261 1251 - -
Apr9g1898 1254 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 775 939 IPR003594 -
Apr9g1898 1254 Coils Coil 640 660 - -
Apr9g1898 1254 Pfam CHASE domain 348 542 IPR006189 -
Apr9g1898 1254 Pfam His Kinase A (phospho-acceptor) domain 663 728 IPR003661 GO:0000155|GO:0007165
Apr9g1898 1254 ProSiteProfiles CHASE domain profile. 345 569 IPR006189 -
Apr9g1898 1254 SMART HisKA_10 663 728 IPR003661 GO:0000155|GO:0007165
Apr9g1898 1254 SMART CHASE_2 345 544 IPR006189 -
Apr9g1898 1254 CDD HATPase_EvgS-ArcB-TorS-like 780 939 - -
Apr9g1898 1254 Gene3D - 296 348 - -
Apr9g1898 1254 Gene3D - 65 102 - -
Apr9g1898 1254 SUPERFAMILY CheY-like 1112 1249 IPR011006 -
Apr9g1898 1254 Gene3D - 727 942 IPR036890 -
Apr9g1898 1254 CDD REC_hyHK_CKI1_RcsC-like 1114 1246 - -
Apr9g1898 1254 Gene3D - 634 726 - -
Apr9g1898 1254 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 717 939 IPR036890 -
Apr9g1898 1254 CDD HisKA 663 724 IPR003661 GO:0000155|GO:0007165
Apr9g1898 1254 Gene3D - 1108 1253 - -
Apr9g1898 1254 PANTHER HISTIDINE KINASE 2 261 1251 - -
Apr9g1898 1254 Pfam Response regulator receiver domain 1114 1243 IPR001789 GO:0000160
Apr9g1898 1254 Gene3D CHASE domain 349 575 IPR042240 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1898 Apr-Chr9 27589667 27600346 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1898 37 158 Miscellaneous Gene Families AT5G35750 27.820 5.41e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Apr9g1898 CHASE 4.3e-34 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1898 K14489 - gmx:100781655 2075.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1898 9 27589667 27600346 Apr9g1898 9 27589667 27600346 ECH