Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1884 ATGGAAGCAAACAAAGAGGAAGCACTTAAAGCAATAGAGATTGCTGAAAAGCGATTTGCTCTGAGAGACTTTGCGGGTGCAAAAAATTATGCTGTAAAGGCTAAGACGCTTTGTCCAGGATTGGAGGGCTTATCTCAAATGGTGGCCACATTTGAAGTTTACATTGCTTCTGAGGTCAAACATAATGGTGAACTAGATTATTATTCAATTCTTGGATTAAAGCCTTCTGCAGATAAAGAGGCTGTGAAGAAACAGTACAAGAAGTTGGCGGTGTTGCTTCATCCAGATAAGAACAAATGTATGGGAGCTGATGGGGCATTTAAGCTAGTTTCTGAGGCTTGGACTTGGCTATCAGATAGTTCTATGCGCAGTTCTTACGATCTCAAGAGGAATGCACAGTATGGTGGAACTAATCAGACAAGTTTATCTGCTGTCCATACTGCAGGGGCTGCTGGTTATAACAAGTGTTCCAATTTGTCAACCTCTTGTGGTAGGCTTGACACCTTTTGGACAATTTGCACCTCTTGTAAGGTTCAGTATGAGTATTTGCGCAAGTACGTGAATAAAAGACTCTCTTGTAAGAACTGCCGTGGCACTTTCATTGCTGTTGAAACTGGGGCAGCCCCGGCAAATGGTTCATTTCCATATTGTCCTTGGTCATATGTGCCCGGAAATGGGTATGGAAGCCATTCATTTGATGGAGTTACTTATGTTCCAACTAATGCCACCTATTTCAATGGGAATGGGGTTGCAGGATATCATTCTGGACATGGATATGAGTATGTTTCAAATGTTTCGTTTCAGTGGGGCTCTGCTGGAGTTGTCAATCAAAATGGATCAACTACCTTACCTGCCGATTCTGTTTATCAGGCCAATGGAAATGCGAAGAGGGGAAGACCAAAAGTCAAATCTGGAGCTGATAAGAGGCAGCACATGGCAGAGACTATGGTCAATACAAATGCAGATGTATCATTCTCTTGTAGTGAACCACAGGAAGATAAGCTAAGTAGACCTGACAAGAAGCAAAAAGTTGTTGTGGGAGCCAGTTTCAGAAATGGCTATGAAGAGAAGGGGTCAAAATGTGCTACAGAGTCTGTAGTGGCAAACGGAAATGATAGCATGGGACATGGCCAGAAGCCTTCCAGCACAAATGAAGCTCAAACCAAACAATATTCCATGGCACCGGCATTTGATGCGAGAAAATTATTGATCGAGAAAGCCAGGACAGAAATTAGGAAGAAATTGGAGGAGATGAAGTTGTCATCCGAAGCTGCAGCAGCTGCAACTTTGAATGAGAAAGAAAAATCACAAGCTGAAATTGGTCAAGTCAAAAGAGAGACATGTAGAAGAGCAGCTCTGAATGTTTCTGGTCTTCAATTAGAACATGGGAAAGCTGGTCCAATCTCAATTACTGTCCCAGATTCTGACTTTCATGACTTTGATAAAGATAGGTCAGAGGAATGTTTCAAGCCGAAGCAAATATGGGCCTTATATGATGAGGAAGATGGAATGCCTCGATTGTATTGTCTGATCCGTGAGGTTGTGTCTGTCAATCCGTTTAAAATTCATATCAGTTACTTGAGTTCCAAAACTGATAGTGAGTTCGGTTCAGTAAACTGGCTGGAATCAGGTTTTACCAAATCTTGTGGAAATTTCAGGGCTTGGAATTCCGATGTTGTTGACCAAGTTAACATATTTTCTCATGTTCTAAGGCAGGAGAAGGCTGGTCGAGGTGGCTGTGTTCGCATTTATCCCAGAAATGGAGATATCTGGGCTGTGTATCGAAATTGGTCACCGGATTGGAACAGATCTACACCGGATAACGTGAGGCATCAGTACGAAATGGTTGAGGTGCTGGATGATTACTCGGAGGAACTTGGCGTCTGTGTTAGTCCACTTATTAAGTCAGCTGGATTTAAGACAGTATATCAGAGGAATACCGACAAAAGCGCCATAAAATGGATACCTAGAAGAGAAATGTTGCGCTTTTCACACCAAGTACCTTCTTGGTTGCTGAAGGGGGAGGCAAGCAATTTGCCTGAAAGGTGTTGGGACCTTGATCCGGCTGCAACTCCAGATGAACTTCTTCATGCCGCTCCTGAAGCAAACGCTTTGTAG 2118 0.4297 MEANKEEALKAIEIAEKRFALRDFAGAKNYAVKAKTLCPGLEGLSQMVATFEVYIASEVKHNGELDYYSILGLKPSADKEAVKKQYKKLAVLLHPDKNKCMGADGAFKLVSEAWTWLSDSSMRSSYDLKRNAQYGGTNQTSLSAVHTAGAAGYNKCSNLSTSCGRLDTFWTICTSCKVQYEYLRKYVNKRLSCKNCRGTFIAVETGAAPANGSFPYCPWSYVPGNGYGSHSFDGVTYVPTNATYFNGNGVAGYHSGHGYEYVSNVSFQWGSAGVVNQNGSTTLPADSVYQANGNAKRGRPKVKSGADKRQHMAETMVNTNADVSFSCSEPQEDKLSRPDKKQKVVVGASFRNGYEEKGSKCATESVVANGNDSMGHGQKPSSTNEAQTKQYSMAPAFDARKLLIEKARTEIRKKLEEMKLSSEAAAAATLNEKEKSQAEIGQVKRETCRRAALNVSGLQLEHGKAGPISITVPDSDFHDFDKDRSEECFKPKQIWALYDEEDGMPRLYCLIREVVSVNPFKIHISYLSSKTDSEFGSVNWLESGFTKSCGNFRAWNSDVVDQVNIFSHVLRQEKAGRGGCVRIYPRNGDIWAVYRNWSPDWNRSTPDNVRHQYEMVEVLDDYSEELGVCVSPLIKSAGFKTVYQRNTDKSAIKWIPRREMLRFSHQVPSWLLKGEASNLPERCWDLDPAATPDELLHAAPEANAL* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1884 705 PRINTS DnaJ domain signature 68 86 IPR001623 -
Apr9g1884 705 PRINTS DnaJ domain signature 86 101 IPR001623 -
Apr9g1884 705 PRINTS DnaJ domain signature 102 122 IPR001623 -
Apr9g1884 705 Coils Coil 426 446 - -
Apr9g1884 705 SMART dnaj_3 65 122 IPR001623 -
Apr9g1884 705 PANTHER BNAC03G44070D PROTEIN 1 698 - -
Apr9g1884 705 CDD DnaJ 66 119 IPR001623 -
Apr9g1884 705 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Apr9g1884 705 PANTHER BNAC03G44070D PROTEIN 1 698 - -
Apr9g1884 705 Gene3D DnaJ domain 55 151 IPR036869 -
Apr9g1884 705 SUPERFAMILY Chaperone J-domain 59 131 IPR036869 -
Apr9g1884 705 MobiDBLite consensus disorder prediction 367 388 - -
Apr9g1884 705 Pfam Domain of unknown function (DUF3444) 469 675 IPR024593 -
Apr9g1884 705 Coils Coil 404 424 - -
Apr9g1884 705 Pfam DnaJ domain 66 127 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1884 Apr-Chr9 27492988 27496454 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1884 4 301 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 30.530 6.44e-33 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1884 - - gmx:100792639 1314.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1884 9 27492988 27496454 Apr9g1884 9 27492988 27496454 ECH