Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1873 ATGTCAGGGGCAAATGCATCCAATTCATCCTTACTTGAACGTCCTAGTGGTGATTCAGTATCTAGTGAAGATCAATCTTTATCCAATAATGGGTTGAATGAGGAAGATGATGATGCCACTAAATCACAACCCATTGCTCCTAATCAATCCGGAAATTATGGACAAGAACACCAGGGGATGCAGCATTCTTCATCATTTGTGCCTTCAGTGCGTGATGATTGCTTTACACAGGCTCCACAGTTGGAACTTGTTGGTCACTCAATTGCATGTGCTTCAAATCCTTATCAGGATCCTTATTATGGGGGCATGATGGCAGCATATGCGCACCAGCAGATGGGATATGGTCCTTTTATGGGAATTCCTCATGCCAGAATGGCTTTGCCCCTTGAGATGGCTCAAGAGCCTGTGTATGTGAATGCCAAACAATATCAAGGAATTCTGAGACGAAGACAGGCTCGTGCTAAAGCAGAGCTTGAAAAAAAATTAATAAAAGTCAGAAAGCCATATCTTCATGAATCTCGGCATCAGCATGCTATGAGAAGAGCAAGGGGCAGTGGAGGACGTTTTGCAAAGAAAACTGAAGGGGAGGCTTCACACCACATGATCAAGGAAAAGGATATGGGAACTGGTCCGGTCCCATCGTCACAATCAGTTAGTTCATCTGGTTCTGAACCTTTGCCCTCTGACTCTGCTGAGACTTGGAACTCTCCAAGTGTGCAACAAGATGCAAGAGGAACTAAAGTGCACGAGAGATTTGACGAACAAAACTATGCAAATGGTAGAGGGTCCTACCATAATCATAATGGTTTGCAATCATCATCAATTTTTTGTTTGCACTCAGGTGAAAGAGTGGAGGAAGGGGACTGTTCTAGTCAACAACGAGGAAGCATCTCATCTGAGCACATGTCACAGAGGCGTCTTGCTATTCAGTAA 933 0.4405 MSGANASNSSLLERPSGDSVSSEDQSLSNNGLNEEDDDATKSQPIAPNQSGNYGQEHQGMQHSSSFVPSVRDDCFTQAPQLELVGHSIACASNPYQDPYYGGMMAAYAHQQMGYGPFMGIPHARMALPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKTEGEASHHMIKEKDMGTGPVPSSQSVSSSGSEPLPSDSAETWNSPSVQQDARGTKVHERFDEQNYANGRGSYHNHNGLQSSSIFCLHSGERVEEGDCSSQQRGSISSEHMSQRRLAIQ* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1873 310 MobiDBLite consensus disorder prediction 172 247 - -
Apr9g1873 310 Gene3D - 132 194 - -
Apr9g1873 310 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 5 301 - -
Apr9g1873 310 MobiDBLite consensus disorder prediction 288 310 - -
Apr9g1873 310 MobiDBLite consensus disorder prediction 172 186 - -
Apr9g1873 310 MobiDBLite consensus disorder prediction 1 33 - -
Apr9g1873 310 ProSitePatterns NF-YA/HAP2 subunit signature. 137 157 IPR018362 GO:0003677|GO:0016602
Apr9g1873 310 MobiDBLite consensus disorder prediction 187 206 - -
Apr9g1873 310 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 5 301 IPR001289 GO:0003700|GO:0006355
Apr9g1873 310 MobiDBLite consensus disorder prediction 210 243 - -
Apr9g1873 310 SMART cbf3 131 192 IPR001289 GO:0003700|GO:0006355
Apr9g1873 310 ProSiteProfiles NF-YA/HAP2 family profile. 132 192 IPR001289 GO:0003700|GO:0006355
Apr9g1873 310 MobiDBLite consensus disorder prediction 290 310 - -
Apr9g1873 310 PRINTS CCAAT-binding transcription factor subunit B signature 135 157 IPR001289 GO:0003700|GO:0006355
Apr9g1873 310 PRINTS CCAAT-binding transcription factor subunit B signature 166 189 IPR001289 GO:0003700|GO:0006355
Apr9g1873 310 MobiDBLite consensus disorder prediction 42 66 - -
Apr9g1873 310 MobiDBLite consensus disorder prediction 1 66 - -
Apr9g1873 310 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 134 189 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1873 Apr-Chr9 27405855 27409841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1873 18 310 CCAAT-HAP2 Transcription Factor Family AT3G20910 47.635 9.69e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Apr9g1873 CBFB_NFYA 6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1873 K08064 - gmx:100808378 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1744 10 30351214 30356058 Apr9g1873 9 27405855 27409841 PCT